Item | Value |
---|---|
gene id | LOC110514470 |
gene name | uba1 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048580.1 |
NCBI id | CM023234.2 |
chromosome length | 78541548 |
location | 76705789 ~ 76774764 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
uba1 | Predicted to enable ubiquitin activating enzyme activity. Acts upstream of or within axonogenesis. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in VEXAS syndrome and X-linked spinal muscular atrophy 2. Orthologous to human UBA1 (ubiquitin like modifier activating enzyme 1). |
description |
---|
LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 1 |
id | name | namespace |
---|---|---|
GO:0006464 | cellular protein modification process | biological_process |
GO:0005524 | ATP binding | molecular_function |
GO:0016874 | ligase activity | molecular_function |
GO:0008641 | ubiquitin-like modifier activating enzyme activity | molecular_function |
id | description |
---|---|
K03178 | UBE1, UBA1; ubiquitin-activating enzyme E1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036947834.1 | False | 3205 | mRNA | 0.55 | 21 | 76705789 | 76743937 |
XM_036947833.1 | False | 3733 | mRNA | 0.54 | 24 | 76705789 | 76756145 |
XM_036947829.1 | False | 3776 | mRNA | 0.54 | 25 | 76705789 | 76756146 |
XM_036947830.1 | False | 3776 | mRNA | 0.54 | 26 | 76705789 | 76756146 |
XM_036947832.1 | False | 3804 | mRNA | 0.54 | 25 | 76705789 | 76756146 |
XM_036947831.1 | True | 3739 | mRNA | 0.54 | 25 | 76705789 | 76774764 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
usp21 | LOC106566311 | coding | downstream | 12031 | 76657903 ~ 76693758 (-) |
LOC110492709 | LOC106566328 | coding | downstream | 63695 | 76561257 ~ 76642094 (-) |
LOC110492699 | tcea2 | coding | downstream | 586199 | 76104209 ~ 76119590 (-) |
LOC110492917 | LOC106566358 | coding | downstream | 1090667 | 75600034 ~ 75615122 (-) |
LOC118939468 | NA | coding | downstream | 1332884 | 75371620 ~ 75372905 (-) |
LOC118939598 | LOC106572974 | coding | upstream | 32387 | 76807151 ~ 76997020 (-) |
LOC110492706 | LOC106566322 | coding | upstream | 327316 | 77102080 ~ 77104717 (-) |
LOC110491186 | LOC106572997 | coding | upstream | 363925 | 77138689 ~ 77144798 (-) |
ikbkg | LOC106572992 | coding | upstream | 719096 | 77493860 ~ 77582658 (-) |
flna | LOC100380643 | coding | upstream | 1180835 | 77955599 ~ 78024979 (-) |
G1410734 | NA | non-coding | downstream | 2332 | 76700484 ~ 76703457 (-) |
G1410739 | NA | non-coding | downstream | 31118 | 76674289 ~ 76674671 (-) |
G1410732 | NA | non-coding | downstream | 50712 | 76651871 ~ 76655077 (-) |
G1410726 | NA | non-coding | downstream | 74969 | 76630512 ~ 76630820 (-) |
G1410725 | NA | non-coding | downstream | 75353 | 76630236 ~ 76630436 (-) |
G1410763 | NA | non-coding | upstream | 525 | 76775289 ~ 76775541 (-) |
G1410771 | NA | non-coding | upstream | 4754 | 76779518 ~ 76795451 (-) |
G1410776 | LOC106591762 | non-coding | upstream | 20881 | 76795583 ~ 76797111 (-) |
G1410858 | NA | non-coding | upstream | 43809 | 76818573 ~ 76841859 (-) |
G1410859 | NA | non-coding | upstream | 44365 | 76819129 ~ 76857456 (-) |
G1410701 | NA | other | downstream | 60125 | 76642780 ~ 76645664 (-) |
G1410696 | NA | other | downstream | 147615 | 76557040 ~ 76558174 (-) |
G1410557 | NA | other | downstream | 393842 | 76253221 ~ 76311947 (-) |
G1410487 | LOC106566354 | other | downstream | 540301 | 76164643 ~ 76165488 (-) |
G1410773 | NA | other | upstream | 17656 | 76792420 ~ 76795053 (-) |
G1410911 | NA | other | upstream | 186706 | 76961470 ~ 76972119 (-) |
G1411281 | NA | other | upstream | 390694 | 77165458 ~ 77165823 (-) |
G1411366 | NA | other | upstream | 574789 | 77349553 ~ 77351225 (-) |