LOC118939598 (LOC106572974)


Basic Information

Item Value
gene id LOC118939598
gene name LOC106572974
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76807151 ~ 76997020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947835.1
CTGAAATACGCGAACCGATtcccacagagagacagacggcaTCAGTCGTGTCTGAGCTATGGCGAGCTGCTGTTTGTTCTTTTACCGAGTCGTGAGAGCGGATGCTCCGAAACGATTTTGTTTTTGAAAATAACTACTAGACCGaaaacaccaaacaggctacttCTGAGGTTTGTGTTCCTGTTAAAGTTTGGATTTTAGACAGTGCACTGCGTGAAGCAGCTATATCGACTCTACCTACACCGAACAGCAGGTGGATGCCGCCATGCCATTTGGGTGCCTTGCCCTGCGAGATGGGCGGAACTTAGACGACATCTCTGATGTCACCGACAAGTACGAGATTGGACAGGTCCTCAAAGCGAAGGAGTTCTGTGAGCTGTGTATggctaaagacagacagaccaacaagGTGTTTGTCTGTAAGAAGTTTCTGAAGAAGGACGGGAGGAAAGTACGCAAGGCTGCCAAGAATGAAatccagatcctcaaaatGGTCAACCATCCAAACATCCTCCAAATGATCGACACTTTCGAGACGCGGAAGGAGTACTTCATCATCCAGGAGCTggctaCAGGCGGTGATGTGTTTGACTGGATTCTGGACCAGGGgaattacacagagagagatgcttcCAACGTGATCAAACAGGTTCTAGAGGCTGTATCCTATCTACACTCACTCAACATCGTACACAGGAACCTCaagTTGGAGAACCTGATGTACTACACAGAGAATAATCACAACAAAGTGGTTCTGCGAGATTTCTACCTGTCCAAGTTTGAGAACGGTTCCATCACAGAACCCTGTGGAACACCGGAGTACCTGGctcctgaGGTTGTGGCCAGACATCGGTACGGTCGACCAGTGGACTGTTGGGCAGTAGGGGTCATCATGTACATACTTCTGTCGGGGAATCCTCCGTTCTACGACGAGACAGAAGAAGAGAACACAGACCTTCACAACCGGATCATCTTCTGTCGTATCATAGCCGGGGAGTTTGAGTTTGACGCTCCTTACTGGGACGACATCTCTGTTCCAGCTAAGGAGTTAGTGTGTAGGCTGATGGAGGTGGACCAGATGCTGAGAATCACAGCTGCAGATGCTCTCTTACACGagtgGATTGCTGGTAACGGGGCCTCGGAGAAGAACCTGAAGGAGGGAGTGTGTGCCCAGTTTGAGAAGAACTTTGCAAAGGCCAAATGGAGGGAGCTGAAGGTACTGTGCTCACTATGagtctggagagggagagagagagagcgggagagagagaaagagagagagagagagcgggagaga

Function

NR:

description
PREDICTED: caM kinase-like vesicle-associated protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947835.1 True 1297 mRNA 0.50 11 76807151 76997020

Neighbor

gene id symbol gene type direction distance location
LOC110514470 uba1 coding downstream 32387 76705789 ~ 76774764 (-)
usp21 LOC106566311 coding downstream 113393 76657903 ~ 76693758 (-)
LOC110492709 LOC106566328 coding downstream 165057 76561257 ~ 76642094 (-)
LOC110492699 tcea2 coding downstream 687561 76104209 ~ 76119590 (-)
LOC110492917 LOC106566358 coding downstream 1192029 75600034 ~ 75615122 (-)
LOC110492706 LOC106566322 coding upstream 105060 77102080 ~ 77104717 (-)
LOC110491186 LOC106572997 coding upstream 141669 77138689 ~ 77144798 (-)
ikbkg LOC106572992 coding upstream 496840 77493860 ~ 77582658 (-)
flna LOC100380643 coding upstream 958579 77955599 ~ 78024979 (-)
LOC118939482 NA coding upstream 1031187 78028207 ~ 78029944 (-)
G1410776 LOC106591762 non-coding downstream 11271 76795583 ~ 76797111 (-)
G1410771 NA non-coding downstream 11700 76779518 ~ 76795451 (-)
G1410763 NA non-coding downstream 31610 76775289 ~ 76775541 (-)
G1410753 NA non-coding downstream 49189 76757660 ~ 76757962 (-)
G1410750 NA non-coding downstream 57946 76748234 ~ 76749205 (-)
G1410949 NA non-coding upstream 12065 77009085 ~ 77010426 (-)
G1410990 NA non-coding upstream 61135 77058155 ~ 77058848 (-)
G1410993 NA non-coding upstream 62296 77059316 ~ 77059969 (-)
G1410995 NA non-coding upstream 64595 77061615 ~ 77061912 (-)
G1410998 NA non-coding upstream 69156 77066176 ~ 77066476 (-)
G1410773 NA other downstream 12098 76792420 ~ 76795053 (-)
G1410701 NA other downstream 161487 76642780 ~ 76645664 (-)
G1410696 NA other downstream 248977 76557040 ~ 76558174 (-)
G1410557 NA other downstream 495204 76253221 ~ 76311947 (-)
G1411281 NA other upstream 168438 77165458 ~ 77165823 (-)
G1411366 NA other upstream 352533 77349553 ~ 77351225 (-)
G1411862 NA other upstream 1053246 78050266 ~ 78053138 (-)
G1411845 rl10 other upstream 1059947 78056967 ~ 78067510 (-)
G1412091 NA other upstream 1319297 78316317 ~ 78318998 (-)

Expression


Co-expression Network