LOC110491186 (LOC106572997)


Basic Information

Item Value
gene id LOC110491186
gene name LOC106572997
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 77138689 ~ 77144798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945807.1
ATGACGGTTGCACCAGGTGACCCGGGGGATGACGCATTCGAACTGGAACCGGACCACGAGTGCTGTGAGCGTGTAGTCATCAACATCTCCGGGCTTCGCTTCGAGACTCAGCGGAAGACCCTCTCCCAGTTCCCTGAGACCCTGCTGGGGGACCCCAAGAAGAGGATGAGgtactTTGATCCTTTGAGGAACGAGTATTTCTTCGACAGGAACCGGCCCAGTTTTGACGCCATCCTCTACTACTACCAGTCAGGAGGGAGACTGCGTCGGCCGGTTAATGTCACTCTAGACATCTTCTCTGAGGAGATCCGCTTCTATGAGCTGGGAGAGGAGGCCATGGAGATCTTCAGAGAGGATGAGGGCTTCATTAAGGAAGAAGAGCGTCCTCTCCCGGAGAATGAGTTTCAGAGACAGGTGTGGCTGCTGTTCGAGTATCCTGAGAGTTCCGGCGCGGCCCGTATCATCGCCATCATCAGTGTCATGGTGATCCTGATCTCTATCGTGTCCTTCTGCCTGGAGACACTCCCAGTGTTCCGGAACGACCATGAAGACAACAATGTGTTCCAGCCCTTCAACAACTCCACCTCTTCCTACACGTCTTCCTACTTCACTGATCCCTTCTTCATCCTGGAGACGCTCTGCATCATCTGGTTCTCCTTTGAGTTTCTCGTCCGCTTCTTCGCGTGTCCTAGTAAAGCCGGGTTCTTCGGTAACATTATGAATATCATCGATATTGTGGCGATTATTCCATATTTCATCACGTTGGGCACAGAGCTGGCAGAGAAACCTGAGGACGGGCAGGCTGGGCAGCAGGCCATGTCCCTCGCCATCCTCAGGGTCATCCGTCTAGTCAGGGTATTCAGGATCTTCAAGCTGTCCAGACACTCCAAGGGGCTCCAGATCCTGGGCCAGACCCTGAAGGCCAGCATGCGGGAGCTTGGCCTTCTCATCTTCTTCCTCTTCATTGGAGTCATCCTCTTCTCCAGTGCTGTTTACTTCGCAGAGGCCGACGAGGCGGACTCCCAGTTCAGTAGCATTCCAGAAGCCTTCTGGTGGGCCGTGGTTTCCATGACCACCGTGGGCTACGGCGACATGGTGCCCACCACCATCGGCGGGAAAATCGTTGGATCGCTCTGCGCCATCGCCGGCGTGCTGACCATTGCGTTACCAGTTCCTGTCATCGTGTCCAACTTCAACTACTTCTACCACCGGGAGACAGAGGGCGAGGAGCAGGCGCAGTACCTGAACACACCCAGTGTGCCCAAGGCCGACTCAGCCGAGGACCTGAAGAAGAGCTGCCGCAGCGGGAGTGGTTCCACCCTCAGTAAGTCAGACTACATGGAGATACAGGAAGCTGCACTGAACCACAGCACAGAAGACTTCAGAGCAGAGAGACTCAAGACAGGCAACTGCACCCTGTTGGCTAATGCTAACACCTTGACTACTGCTAACACGCCAGGTAATGCTAACACCTTGACTAATGCTAACACTCCAGGTAATGCTAACACCTTGGCTAATGCTAACATGCCAGGTAATGCTAACACATTGGCTAATGCACTATCTAACACTAACACGCTGGCTAACACAAACTATGTCAACATCACCAAGATAAGAACGGACGTATAGCTGGATTCAGACGGTATAACACCAACTTCCTGGCCTGTCGGGGTTGACAGGGAACTGGAAGGAAAtagtagaggagggtggaggactgAGTAAagacccttcctctctctgatgTTGTAAAAGGCTTGGAGCCCCTACTGGAGCTGTCCAGACTAGATCACTGAAACTCTGATAGAGGCCCTGCAAGGTGGACCTTAGCCCCTATCTTACCCCCCCAAACTGACCAGTTCCTAACTCAAGCCCCCCTCACCCATCCACCTCTGTTAAGAGGTGAATCTTCCCTGTGTTCAGTGTCTGCATGGCATTAGTCTGGTCAGTGTGACTGTTAAACTGTTCAGTCGTCATCTGTATACACTGCTCCCTACAGTAGCCCAATAGTAGGCGAACTGCCGGCTGATACTAGACCTAAAAACTCTCAGACACCATAGAGGGACCACTCTGCTCATATTGCCAAAATCCCGTCAGCagagatctaggatcagttttcccTGAACAAGTCCTAGCCGTAACCAATAGGAGATATActgcaaaactgaccttagatcagcgtCTCATCATCTTCTAATTACTTAGCTCTAACTGCCAGCCGATAGGAGCTTATTGACCCCACCTCTCCCCCATACGGCCTGATACTCTCTCCCACCTCATACCCCCTGAtactctctcccaccccat

Function

NR:

description
potassium voltage-gated channel subfamily A member 2-like

GO: NA

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945807.1 True 2301 mRNA 0.53 3 77138689 77144798

Neighbor

gene id symbol gene type direction distance location
LOC110492706 LOC106566322 coding downstream 33972 77102080 ~ 77104717 (-)
LOC118939598 LOC106572974 coding downstream 141669 76807151 ~ 76997020 (-)
LOC110514470 uba1 coding downstream 363925 76705789 ~ 76774764 (-)
usp21 LOC106566311 coding downstream 444931 76657903 ~ 76693758 (-)
LOC110492709 LOC106566328 coding downstream 496595 76561257 ~ 76642094 (-)
ikbkg LOC106572992 coding upstream 349062 77493860 ~ 77582658 (-)
flna LOC100380643 coding upstream 810801 77955599 ~ 78024979 (-)
LOC118939482 NA coding upstream 883409 78028207 ~ 78029944 (-)
dnase1l1 LOC106566338 coding upstream 926821 78071619 ~ 78096380 (-)
LOC110512774 LOC106566310 coding upstream 959782 78104580 ~ 78137424 (-)
G1411242 NA non-coding downstream 44414 77092803 ~ 77094275 (-)
G1411015 NA non-coding downstream 48165 77090266 ~ 77090524 (-)
G1411012 NA non-coding downstream 50342 77088145 ~ 77088347 (-)
G1410999 NA non-coding downstream 71872 77066601 ~ 77066817 (-)
G1411343 NA non-coding upstream 171397 77316195 ~ 77317524 (-)
G1411364 NA non-coding upstream 199705 77344503 ~ 77345246 (-)
G1411385 NA non-coding upstream 240381 77385179 ~ 77385505 (-)
G1411407 NA non-coding upstream 309702 77454500 ~ 77456086 (-)
G1411417 NA non-coding upstream 330403 77475201 ~ 77475625 (-)
G1410911 NA other downstream 166570 76961470 ~ 76972119 (-)
G1410776 LOC106591762 other downstream 341578 76795583 ~ 76797111 (-)
G1410773 NA other downstream 343636 76792420 ~ 76795053 (-)
G1410701 NA other downstream 493025 76642780 ~ 76645664 (-)
G1410696 NA other downstream 580515 76557040 ~ 76558174 (-)
G1411281 NA other upstream 20660 77165458 ~ 77165823 (-)
G1411366 NA other upstream 204755 77349553 ~ 77351225 (-)
G1411862 NA other upstream 905468 78050266 ~ 78053138 (-)
G1411845 rl10 other upstream 912169 78056967 ~ 78067510 (-)
G1412091 NA other upstream 1171519 78316317 ~ 78318998 (-)

Expression


Co-expression Network