LOC110532872 (rl10)


Basic Information

Item Value
gene id LOC110532872
gene name rl10
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 78059245 ~ 78067417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036633.1
GTCTGTCTGACTTCCTTTCCTCCATTCGGTGAGTACACGGTGACATCGTGGTCTCTGCCGCTCTTctaaaaaattatagaaaataaTGTATTCGTCCACTCTAGGACCATAGCTACTTTCCATTCGTAATAAGTGTTTGTGTTATTTTAACAGATCGCAGCCATGGGTCGCCGGCCAGCCCGATGCTACCGCTACTGCAAGAACAAGCCCTACCCCAAGTCCCGTTTCTGTCGCGGTGTGCCTGATCCTAAGATTAGGATCTTTGACCTGGGCAGGAAGAAGGCCAGGGTGGACGAGTTCCCTCTGTGTGGTCACATGGTCTCTGACGAGTACGAGCAGCTGTCCTCTGAAGCTCTGGAGGCAGCCCGTATCTGTGCCAACAAGTACATGGTGAAGACCTGTGGAAAGGACGGCTTCCACATCCGGGTCCGCCTGCACCCCTTCCATGTCATCCGTATCAACAAGATGTTGTCCTGCGCTGGGGCTGACAGGCTCCAGACAGGGATGCGTGGTGCGTTCGGTAAACCCCTGGGCACCGTGGCCCGTGTTAGAATCGGTCAGGTGATCATGTCTGTCCGCACCAAGGCCAGCAACAAGGAGCACATTATCGAGGCTCTCCGCAGAGCCAAGTTCAAGTTCCCCGGACGCCAGAAGatcCACATGTCTAAGAAGTACGGCTTCACCAAGTTCAACGCGGTGGACTTTGACCAAATGATGGCTGAAAAGCGTGTGATTCCTGATGGCTGTGGGGTGAAGTACATCCCTTCGACTGGTCCTCTGGCTCGCTGGAAGAAGATTCACGCCATCTAGACACCCAACTACAGACGGTCTGGTCCTCTGGCTCGCTGGAAGAAGATTCACGCCATCTAGACACCCAACTACAGACGGTCTGGACAGGTTCAACATCCCATAGGATGCCTGTCTGGTCCTCGGCTTCACAAGAGGTCAGACATGGTGAATGAATACATCTGAATAGTCGGCAAATAAAATATTAATC
>XM_021617027.2
GTCTGTCTGACTTCCTTTCCTCCATTCGGTGAGTACACGGTGACATCGTGGTCTCTGCCGCTCTTctaaaaaattatagaaaataaTGTATTCGTCCACTCTAGGACCATAGCTACTTTCCATTCGTAATAAGTGTTTGTGTTATTTTAACAGATCGCAGCCATGGGTCGCCGGCCAGCCCGATGCTACCGCTACTGCAAGAACAAGCCCTACCCCAAGTCCCGTTTCTGTCGCGGTGTGCCTGATCCTAAGATTAGGATCTTTGACCTGGGCAGGAAGAAGGCCAGGGTGGACGAGTTCCCTCTGTGTGGTCACATGGTCTCTGACGAGTACGAGCAGCTGTCCTCTGAAGCTCTGGAGGCAGCCCGTATCTGTGCCAACAAGTACATGGTGAAGACCTGTGGAAAGGACGGCTTCCACATCCGGGTCCGCCTGCACCCCTTCCATGTCATCCGTATCAACAAGATGTTGTCCTGCGCTGGGGCTGACAGGCTCCAGACAGGGATGCGTGGTGCGTTCGGTAAACCCCTGGGCACCGTGGCCCGTGTTAGAATCGGTCAGGTGATCATGTCTGTCCGCACCAAGGCCAGCAACAAGGAGCACATTATCGAGGCTCTCCGCAGAGCCAAGTTCAAGTTCCCCGGACGCCAGAAGatcCACATGTCTAAGAAGTACGGCTTCACCAAGTTCAACGCGGTGGACTTTGACCAAATGATGGCTGAAAAGCGTGTGATTCCTGATGGCTGTGGGGTGAAGTACATCCCTTCGACTGGTCCTCTGGCTCGCTGGAAGAAGATTCACGCCATCTAGACACCCAACTACAGACGGTCTGGTCCTCTGGCTCGCTGGAAGAAGATTCACGCCATCTAGACACCCAACTACAGACGGTCTGGTCCTCTGGCTCGCTGGAAGAAGATTACGCCATCTAGACACCCAACTACAGACGGTCTGGACAGGTTCAACATCCCATAGGATGCCTGTCTGGTCCTCGGCTTCACAAGAGGTCAGACATGGTGAATGAATACATCTGAATAGTCGGCAAATAAAATATTAATCTGA
>XM_036947857.1
GTCTGTCTGACTTCCTTTCCTCCATTCGGTGAGTACACGGTGACATCGTGGTCTCTGCCGCTCTTctaaaaaattatagaaaataaTGTATTCGTCCACTCTAGGACCATAGCTACTTTCCATTCGTAATAAGTGTTTGTGTTATTTTAACAGATCGCAGCCATGGGTCGCCGGCCAGCCCGATGCTACCGCTACTGCAAGAACAAGCCCTACCCCAAGTCCCGTTTCTGTCGCGGTGTGCCTGATCCTAAGATTAGGATCTTTGACCTGGGCAGGAAGAAGGCCAGGGTGGACGAGTTCCCTCTGTGTGGTCACATGGTCTCTGACGAGTACGAGCAGCTGTCCTCTGAAGCTCTGGAGGCAGCCCGTATCTGTGCCAACAAGTACATGGTGAAGACCTGTGGAAAGGACGGCTTCCACATCCGGGTCCGCCTGCACCCCTTCCATGTCATCCGTATCAACAAGATGTTGTCCTGCGCTGGGGCTGACAGGCTCCAGACAGGGATGCGTGGTGCGTTCGGTAAACCCCTGGGCACCGTGGCCCGTGTTAGAATCGGTCAGGTGATCATGTCTGTCCGCACCAAGGCCAGCAACAAGGAGCACATTATCGAGGCTCTCCGCAGAGCCAAGTTCAAGTTCCCCGGACGCCAGAAGatcCACATGTCTAAGAAGTACGGCTTCACCAAGTTCAACGCGGTGGACTTTGACCAAATGATGGCTGAAAAGCGTGTGATTCCTGATGGCTGTGGGGTGAAGTACATCCCTTCGACTGGTCCTCTGGCTCGCTGGAAGAAGATTCACGCCATCTAGACACCCAGGTCCTCTGGCTCGCTGGAAGAAGATTACGCCATCTAGACACCCAACTACAGACGGTCTGGACAGGTTCAACATCCCATAGGATGCCTGTCTGGTCCTCGGCTTCACAAGAGGTCAGACATGGTGAATGAATACATCTGAATAGTCGGCAAATAAAATATTAATCTGA
>XM_036947858.1
GTCTGTCTGACTTCCTTTCCTCCATTCGGTGAGTACACGGTGACATCGTGGTCTCTGCCGCTCTTctaaaaaattatagaaaataaTGTATTCGTCCACTCTAGGACCATAGCTACTTTCCATTCGTAATAAGTGTTTGTGTTATTTTAACAGATCGCAGCCATGGGTCGCCGGCCAGCCCGATGCTACCGCTACTGCAAGAACAAGCCCTACCCCAAGTCCCGTTTCTGTCGCGGTGTGCCTGATCCTAAGATTAGGATCTTTGACCTGGGCAGGAAGAAGGCCAGGGTGGACGAGTTCCCTCTGTGTGGTCACATGGTCTCTGACGAGTACGAGCAGCTGTCCTCTGAAGCTCTGGAGGCAGCCCGTATCTGTGCCAACAAGTACATGGTGAAGACCTGTGGAAAGGACGGCTTCCACATCCGGGTCCGCCTGCACCCCTTCCATGTCATCCGTATCAACAAGATGTTGTCCTGCGCTGGGGCTGACAGGCTCCAGACAGGGATGCGTGGTGCGTTCGGTAAACCCCTGGGCACCGTGGCCCGTGTTAGAATCGGTCAGGTGATCATGTCTGTCCGCACCAAGGCCAGCAACAAGGAGCACATTATCGAGGCTCTCCGCAGAGCCAAGTTCAAGTTCCCCGGACGCCAGAAGatcCACATGTCTAAGAAGTACGGCTTCACCAAGTTCAACGCGGTGGACTTTGACCAAATGATGGCTGAAAAGCGTGTGATTCCTGATGGCTGTGGGGTGAAGTACATCCCTTCGACTGGTCCTCTGGCTCGCTGGAAGAAGATTCACGCCATCTAGACACCCAACTACAGACGGTCTGGTCCTCTGGCTCGCTGGAAGAAGATTACGCCATCTAGACACCCAACTACAGACGGTCTGGACAGGTTCAACATCCCATAGGATGCCTGTCTGGTCCTCGGCTTCACAAGAGGTCAGACATGGTGAATGAATACATCTGAATAGTCGGCAAATAAAATATTAATCTGA
>XM_036947859.1
GTCTGTCTGACTTCCTTTCCTCCATTCGGTGAGTACACGGTGACATCGTGGTCTCTGCCGCTCTTctaaaaaattatagaaaataaTGTATTCGTCCACTCTAGGACCATAGCTACTTTCCATTCGTAATAAGTGTTTGTGTTATTTTAACAGATCGCAGCCATGGGTCGCCGGCCAGCCCGATGCTACCGCTACTGCAAGAACAAGCCCTACCCCAAGTCCCGTTTCTGTCGCGGTGTGCCTGATCCTAAGATTAGGATCTTTGACCTGGGCAGGAAGAAGGCCAGGGTGGACGAGTTCCCTCTGTGTGGTCACATGGTCTCTGACGAGTACGAGCAGCTGTCCTCTGAAGCTCTGGAGGCAGCCCGTATCTGTGCCAACAAGTACATGGTGAAGACCTGTGGAAAGGACGGCTTCCACATCCGGGTCCGCCTGCACCCCTTCCATGTCATCCGTATCAACAAGATGTTGTCCTGCGCTGGGGCTGACAGGCTCCAGACAGGGATGCGTGGTGCGTTCGGTAAACCCCTGGGCACCGTGGCCCGTGTTAGAATCGGTCAGGTGATCATGTCTGTCCGCACCAAGGCCAGCAACAAGGAGCACATTATCGAGGCTCTCCGCAGAGCCAAGTTCAAGTTCCCCGGACGCCAGAAGatcCACATGTCTAAGAAGTACGGCTTCACCAAGTTCAACGCGGTGGACTTTGACCAAATGATGGCTGAAAAGCGTGTGATTCCTGATGGCTGTGGGGTGAAGTACATCCCTTCGACTGGTCCTCTGGCTCGCTGGAAGAAGATTCACGCCATCTAGACACCCAACTACAGACGGTCTGGACAGGTTCAACATCCCATAGGATGCCTGTCTGGTCCTCGGCTTCACAAGAGGTCAGACATGGTGAATGAATACATCTGAATAGTCGGCAAATAAAATATTAATCTGA

Function

NR:

description
60S ribosomal protein L10

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02866 RP-L10e, RPL10; large subunit ribosomal protein L10e

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036633.1 False 997 mRNA 0.52 7 78059245 78067414
XM_021617027.2 False 1059 mRNA 0.53 6 78059245 78067417
XM_036947857.1 False 985 mRNA 0.52 7 78059245 78067417
XM_036947858.1 False 999 mRNA 0.52 7 78059245 78067417
XM_036947859.1 True 940 mRNA 0.52 8 78059245 78067417
Loading

Neighbor

gene id symbol gene type direction distance location
haus7 haus7 coding upstream 116416 77928168 ~ 77942829 (+)
LOC110515266 atp2b3 coding upstream 226686 77657611 ~ 77832559 (+)
LOC110519365 NA coding upstream 300842 77754223 ~ 77758403 (+)
LOC110492713 LOC106566291 coding upstream 410703 77611662 ~ 77648542 (+)
LOC110515522 LOC106566305 coding upstream 612169 77347958 ~ 77447742 (+)
hsd17b10 hsd17b10 coding downstream 81290 78148707 ~ 78167143 (+)
LOC110492717 LOC106593306 coding downstream 421367 78488784 ~ 78511036 (+)
G1411638 NA non-coding upstream 17742 78040860 ~ 78041503 (+)
G1411582 LOC100380643 non-coding upstream 82464 77974834 ~ 77976781 (+)
G1411588 NA non-coding upstream 111143 77947770 ~ 77948102 (+)
G1411587 NA non-coding upstream 111912 77945731 ~ 77947333 (+)
G1411585 NA non-coding upstream 114115 77944233 ~ 77945130 (+)
G1411643 NA non-coding downstream 6338 78073755 ~ 78076913 (+)
G1411651 LOC106572983 non-coding downstream 34834 78102251 ~ 78115591 (+)
G1411659 NA non-coding downstream 49325 78116742 ~ 78120769 (+)
G1411683 NA non-coding downstream 70653 78138070 ~ 78138347 (+)
G1411684 NA non-coding downstream 71103 78138520 ~ 78138730 (+)
G1411161 NA other upstream 564904 77492694 ~ 77494341 (+)
G1410994 NA other upstream 997151 77061502 ~ 77062094 (+)
G1410829 NA other upstream 1086902 76961443 ~ 76972343 (+)
G1411664 NA other downstream 55893 78123310 ~ 78123962 (+)
G1411988 ccdc115 other downstream 336774 78404191 ~ 78413546 (+)

Expression

LOC110532872(rl10) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1250.
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LOC110532872(rl10) Expression in each Bioproject

Bar chart with 21 bars.
LOC110532872(rl10) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40000.
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Co-expression Network