dnase1l1 (LOC106566338)


Basic Information

Item Value
gene id dnase1l1
gene name LOC106566338
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 78071619 ~ 78096380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947855.1
GTAAGCCGACTCCACCAAGTTAGTAAGACCACAGAATCTTGGCACCAtgtcatcctcttcctccctcctcctcctcctcttcctcctctctctgagcGGGGTGAAGCTGATCTCAGGGTTTAAGATCTGTGCCTTTAACGTCCAAAGCTTCGGAGACTCCAAGTCACGCAACACTGAAGTCATGCACACACTAATACGGatcgTGTCTCGTTGTGATGTGTGCCTGCTACAGGAAGTGagagacactaaacagaaagccATACCGCTGCTGATAACTGAACTGAACAgGTATGACAGCCAGAACCAGTATGATTATGTGGCCAGTGAGCGGCTGGGCAGGACACCTAGCTACCAGGAGcagtatgtgtttgtgttcaggatCGGCTCTGTGACAGTAACAGATCAGTACCAGTATTCTGACATGTTGCCGGGAGACGAGGATGCCTTCTCCAGAGAACCCTTCATCATCCGCCTTCACACCCCCAAGACAGccaTACGGAACTTTGTGTTAGTACCCCAGCACACCACTCCCACCAATGCTACTAAAGAGATTGATGCCCTCTACGATGTCTTCCTGGATGTCAAGAAGAAATGGAAGACAGAGatggtgaTGTTCCTAGGGGATTTTAACGCTGACTGTGGCTACGTGGCCAAGAAGAACTGGCAGCATGTACGTCTCTATAGTAACCAGGCCTTCCTGTGGCTAATAGGGCACACAGAGGACACCACCGTTAGACAAACCACCACCTGTGCCTACGacaggaTCGTGGTCCACGGGGAGGCATTTGAAAAAGCCATCGTGCCCCAGTCTGCACAACCTTTCAACTTCGCCAAAGAATACGGCCTCACAGAGGAACAGGCGCTGGATGTCAGTGACCACTACCCAGTGGAGGTTGAGTTGAAGGCGGGGTCAGAACATTTGGGAGGCCACACCCTTCTGATCCTCCTCATGGCCTTCTTCATCTCCACCTGAACCTGTGGCCACGTTCCAGGCCGACTATACTgcattgcatcaaccaatggttgtgtcCCATGTCAAGCATCAGATGGCTATACTGTATCATATGatgtgtactgaacaaaaatataaacgccacATAAAACCATTtcaaacatt
>XM_036947856.1
GTAGCAGCGGGGCAGTCTTCTCTTGAACCAGGAAGAAGAAACTTGGCACCAtgtcatcctcttcctccctcctcctcctcctcttcctcctctctctgagcGGGGTGAAGCTGATCTCAGGGTTTAAGATCTGTGCCTTTAACGTCCAAAGCTTCGGAGACTCCAAGTCACGCAACACTGAAGTCATGCACACACTAATACGGatcgTGTCTCGTTGTGATGTGTGCCTGCTACAGGAAGTGagagacactaaacagaaagccATACCGCTGCTGATAACTGAACTGAACAgGTATGACAGCCAGAACCAGTATGATTATGTGGCCAGTGAGCGGCTGGGCAGGACACCTAGCTACCAGGAGcagtatgtgtttgtgttcaggatCGGCTCTGTGACAGTAACAGATCAGTACCAGTATTCTGACATGTTGCCGGGAGACGAGGATGCCTTCTCCAGAGAACCCTTCATCATCCGCCTTCACACCCCCAAGACAGccaTACGGAACTTTGTGTTAGTACCCCAGCACACCACTCCCACCAATGCTACTAAAGAGATTGATGCCCTCTACGATGTCTTCCTGGATGTCAAGAAGAAATGGAAGACAGAGatggtgaTGTTCCTAGGGGATTTTAACGCTGACTGTGGCTACGTGGCCAAGAAGAACTGGCAGCATGTACGTCTCTATAGTAACCAGGCCTTCCTGTGGCTAATAGGGCACACAGAGGACACCACCGTTAGACAAACCACCACCTGTGCCTACGacaggaTCGTGGTCCACGGGGAGGCATTTGAAAAAGCCATCGTGCCCCAGTCTGCACAACCTTTCAACTTCGCCAAAGAATACGGCCTCACAGAGGAACAGGCGCTGGATGTCAGTGACCACTACCCAGTGGAGGTTGAGTTGAAGGCGGGGTCAGAACATTTGGGAGGCCACACCCTTCTGATCCTCCTCATGGCCTTCTTCATCTCCACCTGAACCTGTGGCCACGTTCCAGGCCGACTATACTgcattgcatcaaccaatggttgtgtcCCATGTCAAGCATCAGATGGCTATACTGTATCATATGatgtgtactgaacaaaaatataaacgccacATAAAACCATTtcaaacatt
>XM_036947854.1
gggtgggatAGAGAGGGTAGCAGCGGGGCAGTCTTCTCTTGAACCAGGAAGAAGAAAGTAAGCCGACTCCACCAAGTTACTTGGCACCAtgtcatcctcttcctccctcctcctcctcctcttcctcctctctctgagcGGGGTGAAGCTGATCTCAGGGTTTAAGATCTGTGCCTTTAACGTCCAAAGCTTCGGAGACTCCAAGTCACGCAACACTGAAGTCATGCACACACTAATACGGatcgTGTCTCGTTGTGATGTGTGCCTGCTACAGGAAGTGagagacactaaacagaaagccATACCGCTGCTGATAACTGAACTGAACAgGTATGACAGCCAGAACCAGTATGATTATGTGGCCAGTGAGCGGCTGGGCAGGACACCTAGCTACCAGGAGcagtatgtgtttgtgttcaggatCGGCTCTGTGACAGTAACAGATCAGTACCAGTATTCTGACATGTTGCCGGGAGACGAGGATGCCTTCTCCAGAGAACCCTTCATCATCCGCCTTCACACCCCCAAGACAGccaTACGGAACTTTGTGTTAGTACCCCAGCACACCACTCCCACCAATGCTACTAAAGAGATTGATGCCCTCTACGATGTCTTCCTGGATGTCAAGAAGAAATGGAAGACAGAGatggtgaTGTTCCTAGGGGATTTTAACGCTGACTGTGGCTACGTGGCCAAGAAGAACTGGCAGCATGTACGTCTCTATAGTAACCAGGCCTTCCTGTGGCTAATAGGGCACACAGAGGACACCACCGTTAGACAAACCACCACCTGTGCCTACGacaggaTCGTGGTCCACGGGGAGGCATTTGAAAAAGCCATCGTGCCCCAGTCTGCACAACCTTTCAACTTCGCCAAAGAATACGGCCTCACAGAGGAACAGGCGCTGGATGTCAGTGACCACTACCCAGTGGAGGTTGAGTTGAAGGCGGGGTCAGAACATTTGGGAGGCCACACCCTTCTGATCCTCCTCATGGCCTTCTTCATCTCCACCTGAACCTGTGGCCACGTTCCAGGCCGACTATACTgcattgcatcaaccaatggttgtgtcCCATGTCAAGCATCAGATGGCTATACTGTATCATATGatgtgtactgaacaaaaatataaacgccacATAAAACCATTtcaaacatt
>XM_036947853.1
GTGACCCCTCCTACAGGAagcagagaggggtggggtgggatAGAGAGGGTAGCAGCGGGGCAGTCTTCTCTTGAACCAGGAAGAAGAAAGTAAGCCGACTCCACCAACTTGGCACCAtgtcatcctcttcctccctcctcctcctcctcttcctcctctctctgagcGGGGTGAAGCTGATCTCAGGGTTTAAGATCTGTGCCTTTAACGTCCAAAGCTTCGGAGACTCCAAGTCACGCAACACTGAAGTCATGCACACACTAATACGGatcgTGTCTCGTTGTGATGTGTGCCTGCTACAGGAAGTGagagacactaaacagaaagccATACCGCTGCTGATAACTGAACTGAACAgGTATGACAGCCAGAACCAGTATGATTATGTGGCCAGTGAGCGGCTGGGCAGGACACCTAGCTACCAGGAGcagtatgtgtttgtgttcaggatCGGCTCTGTGACAGTAACAGATCAGTACCAGTATTCTGACATGTTGCCGGGAGACGAGGATGCCTTCTCCAGAGAACCCTTCATCATCCGCCTTCACACCCCCAAGACAGccaTACGGAACTTTGTGTTAGTACCCCAGCACACCACTCCCACCAATGCTACTAAAGAGATTGATGCCCTCTACGATGTCTTCCTGGATGTCAAGAAGAAATGGAAGACAGAGatggtgaTGTTCCTAGGGGATTTTAACGCTGACTGTGGCTACGTGGCCAAGAAGAACTGGCAGCATGTACGTCTCTATAGTAACCAGGCCTTCCTGTGGCTAATAGGGCACACAGAGGACACCACCGTTAGACAAACCACCACCTGTGCCTACGacaggaTCGTGGTCCACGGGGAGGCATTTGAAAAAGCCATCGTGCCCCAGTCTGCACAACCTTTCAACTTCGCCAAAGAATACGGCCTCACAGAGGAACAGGCGCTGGATGTCAGTGACCACTACCCAGTGGAGGTTGAGTTGAAGGCGGGGTCAGAACATTTGGGAGGCCACACCCTTCTGATCCTCCTCATGGCCTTCTTCATCTCCACCTGAACCTGTGGCCACGTTCCAGGCCGACTATACTgcattgcatcaaccaatggttgtgtcCCATGTCAAGCATCAGATGGCTATACTGTATCATATGatgtgtactgaacaaaaatataaacgccacATAAAACCATTtcaaacatt

Function

NR:

description
deoxyribonuclease-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947855.1 False 1117 mRNA 0.50 9 78071619 78096291
XM_036947856.1 False 1121 mRNA 0.50 9 78071619 78096332
XM_036947854.1 False 1159 mRNA 0.51 9 78071619 78096348
XM_036947853.1 True 1187 mRNA 0.51 9 78071619 78096380

Neighbor

gene id symbol gene type direction distance location
LOC118939482 NA coding downstream 41675 78028207 ~ 78029944 (-)
flna LOC100380643 coding downstream 46640 77955599 ~ 78024979 (-)
ikbkg LOC106572992 coding downstream 488961 77493860 ~ 77582658 (-)
LOC110491186 LOC106572997 coding downstream 926821 77138689 ~ 77144798 (-)
LOC110492706 LOC106566322 coding downstream 966902 77102080 ~ 77104717 (-)
LOC110512774 LOC106566310 coding upstream 8200 78104580 ~ 78137424 (-)
ndnl2 LOC106593143 coding upstream 71585 78167965 ~ 78193667 (-)
LOC110492727 NA coding upstream 105505 78201885 ~ 78203768 (-)
LOC110492720 LOC106573003 coding upstream 109759 78206139 ~ 78314948 (-)
LOC110492722 LOC106566331 coding upstream 227697 78324077 ~ 78381586 (-)
G1411867 NA non-coding downstream 3777 78067568 ~ 78067842 (-)
G1411845 rl10 non-coding downstream 4109 78056967 ~ 78067510 (-)
G1411850 LOC106592737 non-coding downstream 6336 78064518 ~ 78065283 (-)
G1411861 NA non-coding downstream 25975 78045314 ~ 78045644 (-)
G1411819 NA non-coding downstream 119114 77951227 ~ 77952505 (-)
G1411876 NA non-coding upstream 20366 78116746 ~ 78120205 (-)
G1411896 NA non-coding upstream 50939 78147319 ~ 78147782 (-)
G1411906 NA non-coding upstream 72097 78168477 ~ 78172534 (-)
G1411909 NA non-coding upstream 82425 78178805 ~ 78179268 (-)
G1411857 NA non-coding upstream 98484 78194864 ~ 78195637 (-)
G1411862 NA other downstream 18481 78050266 ~ 78053138 (-)
G1411366 NA other downstream 720394 77349553 ~ 77351225 (-)
G1411281 NA other downstream 905796 77165458 ~ 77165823 (-)
G1410911 NA other downstream 1099500 76961470 ~ 76972119 (-)
G1412091 NA other upstream 219937 78316317 ~ 78318998 (-)
G1412203 LOC100136012 other upstream 407911 78504291 ~ 78511632 (-)

Expression


Co-expression Network