LOC110512774 (LOC106566310)


Basic Information

Item Value
gene id LOC110512774
gene name LOC106566310
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 78104580 ~ 78137424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947860.1
actagttaccacaaacACGACGTCATACATAAACCCCGCCTATTCCTAAAATGGGATTTAAACCCTAAATTGAGCCACTCTGCTAGCCGTATGCCTAATAGTAACCTTtaaattaagacaaaaaaaaacaaacatgtgatATAACCCATTTTTGTGTTTGGGATAACTAGTGACAACCAGTCCTCAGCGAGAACCTGGAGCATCTCAAGATGGCGGCCGAACGGAGGATGAGGATGATATCGGGTcggggttgtgtgtctgtgtttctggcCGTGTTGTGCACCTTCTCCGTCGGGACCTGCGACGAACAGGTGCCGCTGATGCTATGGACGAGTGTAGGGTCTGGTCTGCCGTCTCAGGCTGTTCCTGCTGCTGGTCACATAGTGGGTGTCACTCAGCTGAGCTCATACCTGGAGACCGCCCTGGGGTCCGCCCCGCGCAACGTACTGCTCTTCCtgcaggacaagATGAGCATTGAGGACTTCACCATGTACGGAGGGGCGTTTGGCAACAAGCAGGACAGTGCCTTCCCTAACCTCGAGGGGGCGCTCCTCTCCAGCCCTTCCCCATTGGTCCTGCCTGCCGTGGCCTGGCCAGCATCCAGTGCTGTGATCGGTCAACTCCAGGACCAATtagacacctctcctctctacatgGAACCAGAGACGCTCAGCCAGCTACGACTCAACGCGTCTACCCCCGCCCTGCTGGTCTTCAGACTACCCTACAGCACcggATCTGATCTGATGTCTGCTAAGGAGGTTCTCAATGGGAATGatgaGGTGATTGGACAGGTGATGAGCATTATGAAGAGCCAGTCTGTCCCCTACACTGCCGTCTACACTGCAATGAGACCCTCACGGgAGGTGTCATCTCTGTCTATGGATATGGAGGCTAGTGTGGGAGGAGGGCGCTCCCTATTGCAGTacggagacagaaagagggagagagacagacagcgggagagagaaagaggagagaaactaGTCAAGGAGAAGACAGGAGTCTACCCTCCAGTTGAGTTTAAGGAGGGCGGAGCCGGCTGTATCATGCTGTGGGCGGAGAACCTGACCGTGAGCGTGCTCCGTGGTGGTCGTTGGGAACGACACGACCTCACCTCTCTGACCTTTGGCGAGGGCGTGACCCCTAGGCTCCAGGGCTCCCTCTGCAACCAATCACACTCcagTCTGGTTCTAAACTATGAGAATATCCTGGGACACCGTTCCTTCAAACTAATgtttGCCATGTCCCAGCGCCACTACAAGGTGTCAGCTCGCCGCTGGTTCACGCTAGACGCCGTGGAGATAGAATACGACGGTCAGAAAGCAACGTTTAACGGGAGCCGTAATGTGTACGCACCGGCTGAGTACTCCTACCGCTGTCAGTCAGTCACTAACTTCAGATACCCCCTGCTGGTTCCGCGCACCTCCAAAGACCCTGCTAACCAGTGGAGGGTCTCCTTCACGGACTTCCAGATCCAGGGTTTCAACGTGGCAGGGGGAGAGTTCTCCTATGCCAGTGACTGTGCAGGGTTCTTCAGTCCTGGTATCTGGATGGGACTGCTCACCAGTCTACTGATGCTCGTGGTCCTGACCTACGGCCTCCATATGATCATGCAGCTACACACCATGGACCGTTTTGATGACCCCAAGGGACCTGCTATCTCCGTACCACAGACTGACTAACACACATACCACAAGCAAATAatgccccaaacacacacacaccttacacacccacatagacagacagactcatacacatagacggacggacagacagatgtggtcacacagacagacagatgtggtcacacagacagacagatgtggt

Function

NR:

description
V-type proton ATPase subunit S1-like

GO: NA

KEGG:

id description
K03662 ATPeVS1, ATP6S1; V-type H+-transporting ATPase S1 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947860.1 True 1833 mRNA 0.54 10 78104580 78137424

Neighbor

gene id symbol gene type direction distance location
dnase1l1 LOC106566338 coding downstream 8200 78071619 ~ 78096380 (-)
LOC118939482 NA coding downstream 74636 78028207 ~ 78029944 (-)
flna LOC100380643 coding downstream 79601 77955599 ~ 78024979 (-)
ikbkg LOC106572992 coding downstream 521922 77493860 ~ 77582658 (-)
LOC110491186 LOC106572997 coding downstream 959782 77138689 ~ 77144798 (-)
ndnl2 LOC106593143 coding upstream 30541 78167965 ~ 78193667 (-)
LOC110492727 NA coding upstream 64461 78201885 ~ 78203768 (-)
LOC110492720 LOC106573003 coding upstream 68715 78206139 ~ 78314948 (-)
LOC110492722 LOC106566331 coding upstream 186653 78324077 ~ 78381586 (-)
ccdc115 ccdc115 coding upstream 266746 78404170 ~ 78414670 (-)
G1411867 NA non-coding downstream 36738 78067568 ~ 78067842 (-)
G1411845 rl10 non-coding downstream 37070 78056967 ~ 78067510 (-)
G1411850 LOC106592737 non-coding downstream 39297 78064518 ~ 78065283 (-)
G1411861 NA non-coding downstream 58936 78045314 ~ 78045644 (-)
G1411819 NA non-coding downstream 152075 77951227 ~ 77952505 (-)
G1411896 NA non-coding upstream 9895 78147319 ~ 78147782 (-)
G1411906 NA non-coding upstream 31053 78168477 ~ 78172534 (-)
G1411909 NA non-coding upstream 41381 78178805 ~ 78179268 (-)
G1411857 NA non-coding upstream 57440 78194864 ~ 78195637 (-)
G1412102 NA non-coding upstream 108738 78246162 ~ 78247398 (-)
G1411862 NA other downstream 51442 78050266 ~ 78053138 (-)
G1411366 NA other downstream 753355 77349553 ~ 77351225 (-)
G1411281 NA other downstream 938757 77165458 ~ 77165823 (-)
G1410911 NA other downstream 1132461 76961470 ~ 76972119 (-)
G1412091 NA other upstream 178893 78316317 ~ 78318998 (-)
G1412203 LOC100136012 other upstream 366867 78504291 ~ 78511632 (-)

Expression


Co-expression Network