ccdc115 (ccdc115)


Basic Information

Item Value
gene id ccdc115
gene name ccdc115
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 78404170 ~ 78414670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567181.2
CAATCGTTTCTCCACCATTTTTTTTCCCCGTAGGGTaatttagaaacacttaaaataagggctatTTTTTGTAGTAGGGTTACCCTGGAGTGACGTTTTGATAatcgtgtaaatctctctcgggcAAGGTGAAATATCAATATTTTCTGCTCTATTTACTCCAAGATTCTAAAATGCTAATCAGCATTAGAGTAGatatcatgcaagactacaaatctcTGCAAGTTCTTGAACGTCATATcgagctgacacctttgctaacaggtttATTCAATGCCGTACAGATGTGACGTCATCATTTGTGGAGCGATCCCCTCACATGACCAGAAGACAGAATTGGCATTTGAAGCCTCGTAAACAAtcgctctctgactgtctctttcaAACAAACCGTGATACAaacgaaaataagaaaagaaaACCACAATTTAATCGTGTTTTATCAAGATCTAAGTTGGGATAGTCACAGGGGTCTCTGCTCGTCGAACTGTGAGACggtaggagagagcgagagagaaacagagacagagagagatgggtctGTCAGAGAAAGAAGAGTGTGTCTTGTTGGATCAAAAGCTGCTTGTCTTTATGGACCAACTGGAGCTGCTGGAGGAGAAACGAGAGAGACTCAACTCTCTAATAGAACAGggaTGGTTCTCCATATCCAAAGCGAGGTATTCGATGGGCAACAAGCAGGTGTCTGCTCTGCAGTATGGGAGTGAGATGGAACCTCTGGTCCGAGTGCACACCAGGACTCTGGAGAGTGGTGAGGCCGAGTTCCAGACAAAGAGAAGGACGCTGAAGTCTCCTGaagagagacaggtggaggacATTGGACCTAAAGACAAGGAGGGTGTGAGGAGAAGAGTGAAGACGCAGGAGGTCCCAGAGATAGACCAGAGTGACAACAAGCATCCGTGGACAGAGACTGAGCCGGCTCCCTCCTCCAAACCTGAACCCAACCCCCAGCAGGACCCACTGAAGTGGTTTGGAATCCTGGTGCCTCAGACCCTGAAACAGGCCCAGGCCTCATTCAAACAGGtgGTAGAGTTGTCAGCGGAGGTGGCTACTCTCCAGTCTACAGTCCTGACCACCAGACAACAGTTGCAGATGAAACAGAAGAGCAGCAGCCAGACCCCggacctgactgacctgactgacctgactgacagactgacctgactgacagactgacctgactgacctgactgacagactgacctgactgacAGATGAACCAGACGGACAGAAGGACCAGACGGACAGACGAACCAGGCTGACCAGACGGACCACACTGACcagactgacctgactgaccaGATCATGGTTTAGCGTACACAGCCACTCTCTCCCACATAGTATAGTAGTACTTCTGTCTAGAGCCCTTTATACAAAGGCTGAGGGGGCTGCAGCACCCCTGatgaataaatacaaaatatacaaataataaaatatacatCTTTTTTTATCACAA

Function

symbol description
ccdc115 Predicted to enable unfolded protein binding activity. Predicted to be involved in cellular iron ion homeostasis. Predicted to act upstream of or within vacuolar proton-transporting V-type ATPase complex assembly. Predicted to be located in endoplasmic reticulum. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be extrinsic component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIo. Orthologous to human CCDC115 (coiled-coil domain containing 115).

NR:

description
coiled-coil domain-containing protein 115

GO: NA

KEGG:

id description
K23543 CCDC115; coiled-coil domain-containing protein 115

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567181.2 True 1477 mRNA 0.47 6 78404170 78414670
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Neighbor

gene id symbol gene type direction distance location
LOC110492722 LOC106566331 coding downstream 22584 78324077 ~ 78381586 (-)
LOC110492720 LOC106573003 coding downstream 89222 78206139 ~ 78314948 (-)
LOC110492727 NA coding downstream 200402 78201885 ~ 78203768 (-)
ndnl2 LOC106593143 coding downstream 210503 78167965 ~ 78193667 (-)
LOC110512774 LOC106566310 coding downstream 266746 78104580 ~ 78137424 (-)
trnae-uuc-7 NA coding upstream 4148 78418818 ~ 78418889 (-)
trnan-guu-13 NA coding upstream 7308 78421978 ~ 78422051 (-)
fkbpl LOC106591935 coding upstream 26961 78441631 ~ 78454461 (-)
G1412145 NA non-coding downstream 42869 78357403 ~ 78361301 (-)
G1412146 NA non-coding downstream 45269 78358500 ~ 78358901 (-)
G1412115 NA non-coding downstream 130093 78273455 ~ 78274077 (-)
G1412110 NA non-coding downstream 139765 78263982 ~ 78264405 (-)
G1412102 NA non-coding downstream 156772 78246162 ~ 78247398 (-)
G1412169 NA non-coding upstream 37673 78452343 ~ 78453268 (-)
G1412193 NA non-coding upstream 41774 78456444 ~ 78456887 (-)
G1412200 NA non-coding upstream 68807 78483477 ~ 78483683 (-)
G1412202 NA non-coding upstream 72091 78486761 ~ 78486961 (-)
G1412091 NA other downstream 85172 78316317 ~ 78318998 (-)
G1411845 rl10 other downstream 336660 78056967 ~ 78067510 (-)
G1411862 NA other downstream 351032 78050266 ~ 78053138 (-)
G1411366 NA other downstream 1052945 77349553 ~ 77351225 (-)
G1411281 NA other downstream 1238347 77165458 ~ 77165823 (-)
G1412203 LOC100136012 other upstream 89621 78504291 ~ 78511632 (-)

Expression

ccdc115(ccdc115) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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ccdc115(ccdc115) Expression in each Bioproject

Bar chart with 21 bars.
ccdc115(ccdc115) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network