G1330671


Basic Information

Item Value
gene id G1330671
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 175327 ~ 175911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1520732
GTTATAAACCAgttacaacaggttataaaccaACAAGTTATAAACCAACAGGTTATAAACCAACAAGTTATAAACCAACAGGTTATAAACCAACAAGTTATAAACCAACAGGTTATAAACCAACAGGTTATAAACCAgttacaacaggttataaaccaACAGGTTATAAACCAACAGGTTATAAACCAGTTACAACAGCTAATAAACCAACATGTAATAAATCAACAGGTTATTAACCAgttacaacaggttataaaccaACAGGTTATACACCAACAGGTTATAAACCAACAGGTTATAAACCAgttacaacaggttataaaccaACAGGTTATAAACCAGTCACAACAGTTTATAAACCAACAGGTTAAAAACCAgttacaacaggttataaaccaACAGGTTATAAACCAGTCACAACAGGTAATTAACTAGTTGTAACAA

Function

NR:

description
PREDICTED: repetitive proline-rich cell wall protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1520732 True 444 lncRNA 0.32 2 175327 175911

Neighbor

gene id symbol gene type direction distance location
LOC110491242 LOC106578741 coding upstream 25060 132282 ~ 150267 (+)
LOC110491220 NA coding downstream 154253 330164 ~ 425574 (+)
LOC110517286 sipa1l2 coding downstream 282361 458272 ~ 775818 (+)
egln1a NA coding downstream 866027 1041938 ~ 1087375 (+)
nid1a LOC106578745 coding downstream 982526 1158437 ~ 1239914 (+)
lyst LOC106578744 coding downstream 1072103 1248014 ~ 1490396 (+)
G1330550 NA non-coding upstream 62933 59122 ~ 112394 (+)
G1330578 NA non-coding upstream 93739 71401 ~ 81588 (+)
G1330548 LOC106591119 non-coding upstream 137202 24932 ~ 38125 (+)
G1330684 NA non-coding downstream 29732 205643 ~ 208826 (+)
G1330682 NA non-coding downstream 35045 210956 ~ 211950 (+)
G1330702 NA non-coding downstream 65440 241351 ~ 241896 (+)
G1330707 LOC106578738 non-coding downstream 77460 253371 ~ 260036 (+)
G1330718 NA non-coding downstream 141612 317523 ~ 328224 (+)
G1330556 NA other upstream 139290 33661 ~ 36037 (+)
G1330676 NA other downstream 11806 187717 ~ 190795 (+)
G1330834 NA other downstream 164165 340076 ~ 341076 (+)
G1331652 NA other downstream 1262876 1438787 ~ 1439125 (+)

Expression


Co-expression Network