XLOC_003252 (BX324177.5)



Basic Information


Item Value
gene id XLOC_003252
gene name BX324177.5
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11353459 ~ 11380887 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00006420
actttctagattaaaactgcatttggcataatactctataactaatttatcaataaaaatgCCATTTTGTACTGGAAGCTTTTTCGCCGTCAATATCAGGtggtattaaaaaataattaacaatgtcatagtcagatataattaaaacaaacatgatGAAGCCAGTAAATCTGGTTGTGACCTACCCGTGTGTTACTTTTGTTTCTGATGGGGCCAAAAATTATAATGTGCCatttatgtttaaagtaaaattattctatatatatattttttaatttgatatattttcaattaaattcaatatatttctgtctaaggcatatttttaaaatatagacatgaaattgagatgatttttgtatttttgtttacaaataaactttcTGAAGTCTGCTAGTaaacttttaattattacttACTATTAATAATGCATAGTCATCATACATCTCTAAATCTTTATTTCttcagttttacatttagaaagacaaatcaaagttt

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104394

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00006420 True 498 lncRNA 0.25 2 11353459 11380887

Neighbor


gene id symbol gene type direction distance location
XLOC_003251 si:dkey-23f9.6 coding upstream 4754 11347031 ~ 11348705 (+)
XLOC_003249 si:dkey-23f9.4 coding upstream 33606 11303458 ~ 11319853 (+)
XLOC_003248 ptp4a1 coding upstream 78540 11267493 ~ 11274919 (+)
XLOC_003247 myom2a coding upstream 91397 11200550 ~ 11262062 (+)
XLOC_003245 ly75 coding upstream 160254 11120532 ~ 11193205 (+)
XLOC_003258 si:dkey-23f9.9 coding downstream 6622 11387509 ~ 11389462 (+)
XLOC_003259 si:dkey-23f9.12 coding downstream 27005 11407892 ~ 11409744 (+)
XLOC_003261 si:dkey-23f9.13 coding downstream 38299 11419186 ~ 11421106 (+)
XLOC_003263 si:dkey-23f9.11 coding downstream 49665 11430552 ~ 11432479 (+)
XLOC_003268 NA coding downstream 123127 11504014 ~ 11513985 (+)
XLOC_003250 BX324177.11 misc upstream 7360 11345803 ~ 11346099 (+)
XLOC_003257 BX324177.13 misc downstream 5475 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 37146 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 48506 11429393 ~ 11429689 (+)
XLOC_003264 BX324177.22 misc downstream 60573 11441460 ~ 11441756 (+)
XLOC_003265 BX324177.12 misc downstream 69268 11450155 ~ 11450442 (+)
XLOC_003241 NA non-coding upstream 680451 10669135 ~ 10673008 (+)
XLOC_003239 CT990625.1 non-coding upstream 816056 10535456 ~ 10537403 (+)
XLOC_003238 BX005472.1 non-coding upstream 1454829 9898513 ~ 9898630 (+)
XLOC_003237 NA non-coding upstream 1750389 9601745 ~ 9603070 (+)
XLOC_003236 CABZ01079837.1 non-coding upstream 1831386 9511533 ~ 9522073 (+)
XLOC_003269 CR556712.1 non-coding downstream 207191 11588078 ~ 11590676 (+)
XLOC_003271 CR848705.1 non-coding downstream 411521 11792408 ~ 11796299 (+)
XLOC_003273 NA non-coding downstream 428336 11809223 ~ 11823154 (+)
XLOC_003274 NA non-coding downstream 439477 11820364 ~ 11854446 (+)

Expression



Co-expression Network