XLOC_003253


Basic Information

Item Value
gene id XLOC_003253
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11359421 ~ 11359715 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008391
gccgggttcagtggcgcgcgcctgtaatccaagctgctgggaggctgaggctgcggatcgcttgagctcagggcttctggGCTGTAGTGGACTATGTCGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTTCTCCTGGGGGAGCTCGGGACCACCAGGTCGTTTAAGGAGGGGTGAACCGGCCCAGGTCGGAGACGGAGCAGGTCAAAGCCCCCGTGCCGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAGcaacacagagagacgcagact

Function

GO:

id name namespace
GO:1902284 neuron projection extension involved in neuron projection guidance biological_process
GO:0006935 chemotaxis biological_process
GO:0050919 negative chemotaxis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0048519 negative regulation of biological process biological_process
GO:0048523 negative regulation of cellular process biological_process
GO:1990138 neuron projection extension biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0120035 regulation of plasma membrane bounded cell projection organization biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0010977 negative regulation of neuron projection development biological_process
GO:0010721 negative regulation of cell development biological_process
GO:0048846 axon extension involved in axon guidance biological_process
GO:0051241 negative regulation of multicellular organismal process biological_process
GO:0031344 regulation of cell projection organization biological_process
GO:0031345 negative regulation of cell projection organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0051248 negative regulation of protein metabolic process biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048588 developmental cell growth biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0010771 negative regulation of cell morphogenesis involved in differentiation biological_process
GO:0048640 negative regulation of developmental growth biological_process
GO:0040011 locomotion biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0050771 negative regulation of axonogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0030030 cell projection organization biological_process
GO:0045926 negative regulation of growth biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0048675 axon extension biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0032269 negative regulation of cellular protein metabolic process biological_process
GO:0016049 cell growth biological_process
GO:0051961 negative regulation of nervous system development biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005588 collagen type V trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0005539 glycosaminoglycan binding molecular_function
GO:0008201 heparin binding molecular_function
GO:1901681 sulfur compound binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008391 True 295 lncRNA 0.61 1 11359421 11359715

Neighbor

gene id symbol gene type direction distance location
XLOC_003251 si:dkey-23f9.6 coding upstream 10716 11347031 ~ 11348705 (+)
XLOC_003249 si:dkey-23f9.4 coding upstream 39568 11303458 ~ 11319853 (+)
XLOC_003248 ptp4a1 coding upstream 84502 11267493 ~ 11274919 (+)
XLOC_003247 myom2a coding upstream 97359 11200550 ~ 11262062 (+)
XLOC_003246 CR847973.1 coding upstream 178344 11175814 ~ 11181077 (+)
XLOC_003254 si:dkey-23f9.7 coding downstream 926 11360641 ~ 11362457 (+)
XLOC_003256 si:dkey-23f9.8 coding downstream 14306 11374021 ~ 11375944 (+)
XLOC_003258 si:dkey-23f9.9 coding downstream 27794 11387509 ~ 11389462 (+)
XLOC_003259 si:dkey-23f9.12 coding downstream 48177 11407892 ~ 11409744 (+)
XLOC_003261 si:dkey-23f9.13 coding downstream 59471 11419186 ~ 11421106 (+)
XLOC_003250 BX324177.11 misc upstream 13322 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 13171 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 26647 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 58318 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 69678 11429393 ~ 11429689 (+)
XLOC_003264 BX324177.22 misc downstream 81745 11441460 ~ 11441756 (+)
XLOC_003241 NA non-coding upstream 686413 10669135 ~ 10673008 (+)
XLOC_003239 CT990625.1 non-coding upstream 822018 10535456 ~ 10537403 (+)
XLOC_003238 BX005472.1 non-coding upstream 1460791 9898513 ~ 9898630 (+)
XLOC_003237 NA non-coding upstream 1756351 9601745 ~ 9603070 (+)
XLOC_003236 CABZ01079837.1 non-coding upstream 1837348 9511533 ~ 9522073 (+)
XLOC_003268 NA non-coding downstream 144299 11504014 ~ 11513985 (+)
XLOC_003269 CR556712.1 non-coding downstream 228363 11588078 ~ 11590676 (+)
XLOC_003271 CR848705.1 non-coding downstream 432693 11792408 ~ 11796299 (+)
XLOC_003273 NA non-coding downstream 449508 11809223 ~ 11823154 (+)
XLOC_003274 NA non-coding downstream 460649 11820364 ~ 11854446 (+)

Expression


Co-expression Network