Gene
RNA
| Item | Value |
|---|---|
| gene id | G1332512 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 2248630 ~ 2248913 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Retrovirus-related Pol polyprotein LINE-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1522945 | True | 284 | lncRNA | 0.49 | 1 | 2248630 | 2248913 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110491199 | i2b2b | coding | upstream | 266289 | 1978840 ~ 1982341 (+) |
| tomm20a | tomm20 | coding | upstream | 410470 | 1832028 ~ 1838160 (+) |
| arid4b | arid4b | coding | upstream | 422697 | 1611744 ~ 1825933 (+) |
| LOC118939496 | NA | coding | upstream | 474036 | 1771249 ~ 1774594 (+) |
| LOC118939494 | NA | coding | upstream | 690297 | 1556467 ~ 1558333 (+) |
| heatr5b | LOC106578753 | coding | downstream | 46926 | 2295839 ~ 2571759 (+) |
| LOC110535007 | LOC106578653 | coding | downstream | 331380 | 2580293 ~ 2631155 (+) |
| LOC110491239 | LOC106578780 | coding | downstream | 682256 | 2931169 ~ 2939940 (+) |
| trnah-gug-6 | NA | coding | downstream | 696076 | 2944989 ~ 2945060 (+) |
| memo1 | LOC106578779 | coding | downstream | 696499 | 2945412 ~ 2969606 (+) |
| G1332511 | NA | non-coding | upstream | 200 | 2247429 ~ 2248430 (+) |
| G1332508 | NA | non-coding | upstream | 12595 | 2235626 ~ 2236035 (+) |
| G1332486 | pkz | non-coding | upstream | 14870 | 2207482 ~ 2233760 (+) |
| G1332513 | NA | non-coding | downstream | 3336 | 2252249 ~ 2270730 (+) |
| G1332520 | NA | non-coding | downstream | 4884 | 2253797 ~ 2258954 (+) |
| G1332490 | NA | non-coding | downstream | 10521 | 2259434 ~ 2260444 (+) |
| G1332537 | NA | non-coding | downstream | 60805 | 2309718 ~ 2310072 (+) |
| G1332538 | NA | non-coding | downstream | 72521 | 2321434 ~ 2322296 (+) |
| G1332261 | NA | other | upstream | 317498 | 1930754 ~ 1931132 (+) |
| G1332260 | NA | other | upstream | 318157 | 1929324 ~ 1930473 (+) |
| G1331652 | NA | other | upstream | 809505 | 1438787 ~ 1439125 (+) |
| LOC110491220 | NA | other | upstream | 1825356 | 330164 ~ 425574 (+) |
| G1330834 | NA | other | upstream | 1907554 | 340076 ~ 341076 (+) |
| G1332701 | NA | other | downstream | 723895 | 2972808 ~ 2973800 (+) |
| LOC110492796 | slx4ip | other | downstream | 816405 | 3065065 ~ 3201726 (+) |
| G1332826 | NA | other | downstream | 981286 | 3230199 ~ 3231407 (+) |
