G1332677


Basic Information

Item Value
gene id G1332677
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 2835477 ~ 2835817 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1523166
tgtaaactagttttaatgactccaacctaagtgtatgtaaactagttttaatgactccaacctaagtgtatgtaaactagttttaatgactccaacctaagtgtctgtaaactagttttaatgactccaacctaagtgtatgtaaactagttttaatgactccaacctgagtgtatgtaaactagttttaatgactccaacctaagtgtatgtaaactagttttaatgactccaacctaagtgtatgtaaactagttttaatgactccaacctaagtgtatgtaaactagttttaatgactccaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1523166 True 306 lncRNA 0.32 2 2835477 2835817

Neighbor

gene id symbol gene type direction distance location
LOC110535007 LOC106578653 coding upstream 204322 2580293 ~ 2631155 (+)
heatr5b LOC106578753 coding upstream 263718 2295839 ~ 2571759 (+)
LOC110491199 i2b2b coding upstream 853136 1978840 ~ 1982341 (+)
tomm20a tomm20 coding upstream 997317 1832028 ~ 1838160 (+)
LOC118939496 NA coding upstream 1060883 1771249 ~ 1774594 (+)
LOC110491239 LOC106578780 coding downstream 95352 2931169 ~ 2939940 (+)
trnah-gug-6 NA coding downstream 109172 2944989 ~ 2945060 (+)
memo1 LOC106578779 coding downstream 109595 2945412 ~ 2969606 (+)
LOC110492798 LOC106590888 coding downstream 153386 2989203 ~ 3054026 (+)
LOC110492796 slx4ip coding downstream 229248 3065065 ~ 3201726 (+)
G1332674 NA non-coding upstream 1787 2833476 ~ 2833690 (+)
G1332673 NA non-coding upstream 6014 2829199 ~ 2829463 (+)
G1332672 NA non-coding upstream 6310 2828956 ~ 2829167 (+)
G1332665 NA non-coding upstream 26764 2808485 ~ 2808713 (+)
G1332658 NA non-coding upstream 47922 2787331 ~ 2787555 (+)
G1332691 NA non-coding downstream 45434 2881251 ~ 2881678 (+)
G1332688 NA non-coding downstream 45934 2881751 ~ 2882912 (+)
G1332711 NA non-coding downstream 130103 2965920 ~ 2966250 (+)
G1332700 NA non-coding downstream 134328 2970145 ~ 2970796 (+)
G1332699 NA non-coding downstream 136631 2972448 ~ 2972727 (+)
G1332261 NA other upstream 904345 1930754 ~ 1931132 (+)
G1332260 NA other upstream 905004 1929324 ~ 1930473 (+)
G1331652 NA other upstream 1396352 1438787 ~ 1439125 (+)
LOC110491220 NA other upstream 2412203 330164 ~ 425574 (+)
G1332701 NA other downstream 136991 2972808 ~ 2973800 (+)
G1332826 NA other downstream 394382 3230199 ~ 3231407 (+)
G1333963 NA other downstream 1504021 4339838 ~ 4341823 (+)

Expression


Co-expression Network