G1332688


Basic Information

Item Value
gene id G1332688
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 2881751 ~ 2882912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1523177
ctctaaccactaggctaccctgccggccATCCATTCTAAAACTCTTTGTTTAGAGAGTTGCCGTGGTTTcactagctgtggttgctgacatGTACACtgaatggacaaaacattaggaacgactgctctttccatgacagggtgatcccatattgatgtcacttgctaaatccacttattattatttttttttaaaatatggtTTTTAAGGCTTGAAACATggattgggtgtgtgtgtgccattcagagggtgaacgggcaagacagaAGGTTTaattgcctttgaacagggtatggtagtaggccccaggtgcaccggtttgtgacaactgcaacactgctgggtttttcacactcaaaggtgtttcccgtgtgtatcaagaatggtccaccacccatccagccaactggacacaactgtgggaagcattggagtcaacatggaccagcttctctgtggaacgcttttgagaCCTTGAGGAGGCAATATGGGAgtaaggggtggggggggggggtaatatcCTGTTTTCAAGCAGTAGCTATATACACAGTAGTAGAATTTCAACTCTCAAAGCAGTCaatacaacaatttcaacaaaTCAGAACGTAATTCCTGTCTCTATGCAATTTTCTACATTTTTAATCAATCAAATTCTACAGTGGTCTATTCTATTATGCATCTCCATTTCCCTCCCACAAAACTGAAGCAAAACGTTGAAACTGGGAGAGACTGTTTGCTATggtggtgtgcactaatgaacacACCCCTGGTTCCATCACGTCTCAGATGGAACTAACCCAGCTAGCAGATTTGGTTCGTTGGAAGTTAAGGGAACATACGGTTTaggtttcacattggttgtgggaacgaagccataTGCTTCccgagcatttaaaaaaaaaaaaaacgttctgaGAATAGAAGTGAAAACGTTGACTGTTCTGGGTTTAAtgtttaggttgcagggaggttctgagaacgttttccTCTGGTTCcttgataaaacatttttttttaagattttttaaaatgttattttattttcactgttttttttttctttcttctatTTGTTAGTTGTATAacttttaaactgcattgttgggaaaggactCGTAAAGAAGCATTCAATGGTAAAGTCTATACTTCCCGGGGTTTTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1523177 True 1162 lncRNA 0.41 1 2881751 2882912

Neighbor

gene id symbol gene type direction distance location
LOC110535007 LOC106578653 coding upstream 250596 2580293 ~ 2631155 (+)
heatr5b LOC106578753 coding upstream 309992 2295839 ~ 2571759 (+)
LOC110491199 i2b2b coding upstream 899410 1978840 ~ 1982341 (+)
tomm20a tomm20 coding upstream 1043591 1832028 ~ 1838160 (+)
LOC118939496 NA coding upstream 1107157 1771249 ~ 1774594 (+)
LOC110491239 LOC106578780 coding downstream 48257 2931169 ~ 2939940 (+)
trnah-gug-6 NA coding downstream 62077 2944989 ~ 2945060 (+)
memo1 LOC106578779 coding downstream 62500 2945412 ~ 2969606 (+)
LOC110492798 LOC106590888 coding downstream 106291 2989203 ~ 3054026 (+)
LOC110492796 slx4ip coding downstream 182153 3065065 ~ 3201726 (+)
G1332691 NA non-coding upstream 73 2881251 ~ 2881678 (+)
G1332677 NA non-coding upstream 45934 2835477 ~ 2835817 (+)
G1332674 NA non-coding upstream 48061 2833476 ~ 2833690 (+)
G1332673 NA non-coding upstream 52288 2829199 ~ 2829463 (+)
G1332672 NA non-coding upstream 52584 2828956 ~ 2829167 (+)
G1332711 NA non-coding downstream 83008 2965920 ~ 2966250 (+)
G1332700 NA non-coding downstream 87233 2970145 ~ 2970796 (+)
G1332699 NA non-coding downstream 89536 2972448 ~ 2972727 (+)
G1332727 NA non-coding downstream 123285 3006197 ~ 3052569 (+)
G1332729 NA non-coding downstream 125127 3008039 ~ 3008695 (+)
G1332261 NA other upstream 950619 1930754 ~ 1931132 (+)
G1332260 NA other upstream 951278 1929324 ~ 1930473 (+)
G1331652 NA other upstream 1442626 1438787 ~ 1439125 (+)
LOC110491220 NA other upstream 2458477 330164 ~ 425574 (+)
G1332701 NA other downstream 89896 2972808 ~ 2973800 (+)
G1332826 NA other downstream 347287 3230199 ~ 3231407 (+)
G1333963 NA other downstream 1456926 4339838 ~ 4341823 (+)

Expression


Co-expression Network