G1332727


Basic Information

Item Value
gene id G1332727
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 3006197 ~ 3052569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1523233
agtcaatgtggagaatatatacagggtgttacggtacagagtcaatgtggagactatatacagggtgttacggtacagagtcaatgtggaggctatatacagggggtaccagtacagagtcaatgtggaggctatatacagggggtatcagtacagagtcaatgtggagactatatacagggggtaccggtacagagtcaatgtggagactatatacagggggtaacggtaccccctgtatatagcctccacattgactctgtactgataccccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagtctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccggtaccacctgtatatagcctccacattgactctgtaccggtaccccctgtatatagtctccacattgactctgtaccgtaacaccctgtatatagtctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccggtaccccctgtttatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattaactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagtctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggta
>TU1523235
agtcaatgtggagaatatatacagggtgttacggtacagagtcaatgtggagactatatacagggtgttacggtacagagtcaatgtggaggctatatacagggggtaccagtacagagtcaatgtggaggctatatacagggggtatcagtacagagtcaatgtggagactatatacagggggtaccggtacagagtcaatgtggagactatatacagggggtaacggtaccccctgtatatagcctccacattgactctgtactgataccccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagtctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccggtaccacctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtactggtacccc
>TU1523231
ctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtactggtaccccctgtatatagtctccacattgactctgtactggtatccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtgtatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagtctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagtctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagtctccacattgactctgtactggtaccctctgtatatagactccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagtctccacattgactctgtaccgtaacaccctgtatatagactccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccctctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaacaccctgtatataacctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagtctccacattgactctgtaccgtaacaccctgtatatagtctccacattgactctgtaccgtaataccctgtatataacctccacatatactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtactggtaccccctgtatatagtctattgt

Function

NR:

description
PREDICTED: uncharacterized protein LOC106593042

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1523233 False 894 lncRNA 0.47 2 3006197 3050949
TU1523235 False 469 lncRNA 0.47 2 3006197 3007055
TU1523231 True 1449 lncRNA 0.46 2 3050965 3052569

Neighbor

gene id symbol gene type direction distance location
memo1 LOC106578779 coding upstream 36591 2945412 ~ 2969606 (+)
trnah-gug-6 NA coding upstream 61137 2944989 ~ 2945060 (+)
LOC110491239 LOC106578780 coding upstream 66257 2931169 ~ 2939940 (+)
LOC110535007 LOC106578653 coding upstream 375042 2580293 ~ 2631155 (+)
heatr5b LOC106578753 coding upstream 434438 2295839 ~ 2571759 (+)
LOC110492796 slx4ip coding downstream 12496 3065065 ~ 3201726 (+)
LOC118939483 NA coding downstream 633974 3686543 ~ 3687093 (+)
LOC118939498 LOC106591840 coding downstream 642029 3694598 ~ 3730931 (+)
btbd3b LOC106578575 coding downstream 813915 3866484 ~ 3902198 (+)
sptlc3 sptlc3 coding downstream 1081848 4134417 ~ 4229378 (+)
G1332699 NA non-coding upstream 33470 2972448 ~ 2972727 (+)
G1332700 NA non-coding upstream 35401 2970145 ~ 2970796 (+)
G1332711 NA non-coding upstream 39947 2965920 ~ 2966250 (+)
G1332688 NA non-coding upstream 123285 2881751 ~ 2882912 (+)
G1332691 NA non-coding upstream 124519 2881251 ~ 2881678 (+)
G1332739 NA non-coding downstream 4019 3056588 ~ 3057539 (+)
G1332758 NA non-coding downstream 41910 3094479 ~ 3094790 (+)
G1332770 NA non-coding downstream 69550 3122119 ~ 3122585 (+)
G1332774 NA non-coding downstream 78869 3131438 ~ 3132648 (+)
G1332784 NA non-coding downstream 106589 3159158 ~ 3160520 (+)
G1332701 NA other upstream 32397 2972808 ~ 2973800 (+)
G1332261 NA other upstream 1075065 1930754 ~ 1931132 (+)
G1332260 NA other upstream 1075724 1929324 ~ 1930473 (+)
G1332826 NA other downstream 177630 3230199 ~ 3231407 (+)
G1333963 NA other downstream 1287269 4339838 ~ 4341823 (+)
LOC110491218 LOC106578757 other downstream 1682220 4640198 ~ 4973348 (+)
G1334530 NA other downstream 2467371 5519940 ~ 5521230 (+)

Expression


Co-expression Network