G1332729


Basic Information

Item Value
gene id G1332729
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 3008039 ~ 3008695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1523237
CCTCTGTACTGGgttctctactactctcaccactcctccctctgtactgggttctctactactccctctgtactgggttctctactactctcaccactcctccctctgtactgggttctctactactccctctgtactgggttctctactactccctctgtactgggttctctactactccctctgtactggattctctactactctcaccactcctccctctgtactgggttctctactactctcaccactcctccctctgtactgggttctctactactccctctgtactgggttctctactactccctctgtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1523237 True 317 lncRNA 0.51 2 3008039 3008695

Neighbor

gene id symbol gene type direction distance location
memo1 LOC106578779 coding upstream 38433 2945412 ~ 2969606 (+)
trnah-gug-6 NA coding upstream 62979 2944989 ~ 2945060 (+)
LOC110491239 LOC106578780 coding upstream 68099 2931169 ~ 2939940 (+)
LOC110535007 LOC106578653 coding upstream 376884 2580293 ~ 2631155 (+)
heatr5b LOC106578753 coding upstream 436280 2295839 ~ 2571759 (+)
LOC110492796 slx4ip coding downstream 56370 3065065 ~ 3201726 (+)
LOC118939483 NA coding downstream 677848 3686543 ~ 3687093 (+)
LOC118939498 LOC106591840 coding downstream 685903 3694598 ~ 3730931 (+)
btbd3b LOC106578575 coding downstream 857789 3866484 ~ 3902198 (+)
sptlc3 sptlc3 coding downstream 1125722 4134417 ~ 4229378 (+)
G1332699 NA non-coding upstream 35312 2972448 ~ 2972727 (+)
G1332700 NA non-coding upstream 37243 2970145 ~ 2970796 (+)
G1332711 NA non-coding upstream 41789 2965920 ~ 2966250 (+)
G1332688 NA non-coding upstream 125127 2881751 ~ 2882912 (+)
G1332691 NA non-coding upstream 126361 2881251 ~ 2881678 (+)
G1332734 NA non-coding downstream 22678 3031373 ~ 3038088 (+)
G1332735 NA non-coding downstream 30784 3039479 ~ 3039986 (+)
LOC110492798 LOC106590888 non-coding downstream 35022 2989203 ~ 3054026 (+)
G1332739 NA non-coding downstream 47893 3056588 ~ 3057539 (+)
G1332758 NA non-coding downstream 85784 3094479 ~ 3094790 (+)
G1332701 NA other upstream 34239 2972808 ~ 2973800 (+)
G1332261 NA other upstream 1076907 1930754 ~ 1931132 (+)
G1332260 NA other upstream 1077566 1929324 ~ 1930473 (+)
G1332826 NA other downstream 221504 3230199 ~ 3231407 (+)
G1333963 NA other downstream 1331143 4339838 ~ 4341823 (+)
LOC110491218 LOC106578757 other downstream 1726094 4640198 ~ 4973348 (+)
G1334530 NA other downstream 2511245 5519940 ~ 5521230 (+)

Expression


Co-expression Network