Gene
RNA
| Item | Value |
|---|---|
| gene id | G1332784 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 3159158 ~ 3160520 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1523301 | True | 218 | lncRNA | 0.42 | 3 | 3159158 | 3160520 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492798 | LOC106590888 | coding | upstream | 105670 | 2989203 ~ 3054026 (+) |
| memo1 | LOC106578779 | coding | upstream | 189552 | 2945412 ~ 2969606 (+) |
| trnah-gug-6 | NA | coding | upstream | 214098 | 2944989 ~ 2945060 (+) |
| LOC110491239 | LOC106578780 | coding | upstream | 219218 | 2931169 ~ 2939940 (+) |
| LOC110535007 | LOC106578653 | coding | upstream | 528003 | 2580293 ~ 2631155 (+) |
| LOC118939483 | NA | coding | downstream | 526023 | 3686543 ~ 3687093 (+) |
| LOC118939498 | LOC106591840 | coding | downstream | 534078 | 3694598 ~ 3730931 (+) |
| btbd3b | LOC106578575 | coding | downstream | 705964 | 3866484 ~ 3902198 (+) |
| sptlc3 | sptlc3 | coding | downstream | 973897 | 4134417 ~ 4229378 (+) |
| tasp1 | tasp1 | coding | downstream | 1084478 | 4244998 ~ 4337416 (+) |
| G1332774 | NA | non-coding | upstream | 26510 | 3131438 ~ 3132648 (+) |
| G1332770 | NA | non-coding | upstream | 36573 | 3122119 ~ 3122585 (+) |
| G1332758 | NA | non-coding | upstream | 64368 | 3094479 ~ 3094790 (+) |
| G1332739 | NA | non-coding | upstream | 101619 | 3056588 ~ 3057539 (+) |
| G1332788 | NA | non-coding | downstream | 9794 | 3170314 ~ 3171997 (+) |
| LOC110492796 | slx4ip | non-coding | downstream | 37671 | 3065065 ~ 3201726 (+) |
| G1332808 | NA | non-coding | downstream | 42690 | 3203210 ~ 3203435 (+) |
| G1332812 | NA | non-coding | downstream | 45967 | 3206487 ~ 3207034 (+) |
| G1332817 | jag1 | non-coding | downstream | 52594 | 3213114 ~ 3216278 (+) |
| G1332701 | NA | other | upstream | 185358 | 2972808 ~ 2973800 (+) |
| heatr5b | LOC106578753 | other | upstream | 849591 | 2295839 ~ 2571759 (+) |
| G1332261 | NA | other | upstream | 1228026 | 1930754 ~ 1931132 (+) |
| G1332260 | NA | other | upstream | 1228685 | 1929324 ~ 1930473 (+) |
| G1332826 | NA | other | downstream | 69679 | 3230199 ~ 3231407 (+) |
| G1333963 | NA | other | downstream | 1179318 | 4339838 ~ 4341823 (+) |
| LOC110491218 | LOC106578757 | other | downstream | 1574269 | 4640198 ~ 4973348 (+) |
| G1334530 | NA | other | downstream | 2359420 | 5519940 ~ 5521230 (+) |
| G1334592 | NA | other | downstream | 2543315 | 5703835 ~ 5704946 (+) |
