G1333310


Basic Information

Item Value
gene id G1333310
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 3428000 ~ 3430310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1524012
atagccaggggaacactccaacactcagacatcatttgcagatagccaggggaacactccaacactcagacatcatttacagatagccaggggaacactccaacactcagacatcattacagatagccaggggaacactccaacactcagacatcattacagatagccaggggcacactccaacactcagacatcattacagatagccaggggcacactccaacactcagacatcatttgaaacaaagcatttgtgtttggtgagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtccaccagatcagagacagtagggacgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtccaccagatcagaggcagtagggaggaccagggatgttctctgtttagtgagtcctccagatcagagacagtagtgatgaccagggatgttctctgtttggtgagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagagtcagtagggatgaccagggatgttctctgtttagtgagtccaccagatcagaggcagtagggaggaccagggatgttctctgtttagtgagtcctccagatcagagacagtagtgatgaccagggatgttctctgtttggtgagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagaggtagtagggacgaccagggatgttctctgtttagtgagtccaccagatcagaggcagtagggaggaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagggatgaccagggatgctctctgtttagtgagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagatcagtagggatgaccagggatgttctctgtttagtgagtccaccagatcagaggcagtagggaggaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagggaggaccagggatgttctctgtttagtgagtcctccagatcagaagcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttggtgagtcctcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1524012 True 1330 lncRNA 0.50 3 3428000 3430310

Neighbor

gene id symbol gene type direction distance location
LOC110492796 slx4ip coding upstream 226274 3065065 ~ 3201726 (+)
LOC110492798 LOC106590888 coding upstream 374512 2989203 ~ 3054026 (+)
memo1 LOC106578779 coding upstream 458394 2945412 ~ 2969606 (+)
trnah-gug-6 NA coding upstream 482940 2944989 ~ 2945060 (+)
LOC110491239 LOC106578780 coding upstream 488060 2931169 ~ 2939940 (+)
LOC118939483 NA coding downstream 256233 3686543 ~ 3687093 (+)
LOC118939498 LOC106591840 coding downstream 264288 3694598 ~ 3730931 (+)
btbd3b LOC106578575 coding downstream 436174 3866484 ~ 3902198 (+)
sptlc3 sptlc3 coding downstream 704107 4134417 ~ 4229378 (+)
tasp1 tasp1 coding downstream 814688 4244998 ~ 4337416 (+)
G1333304 NA non-coding upstream 4618 3422910 ~ 3423382 (+)
G1333282 NA non-coding upstream 29706 3388588 ~ 3398294 (+)
G1333276 NA non-coding upstream 49028 3378739 ~ 3378972 (+)
G1333272 NA non-coding upstream 51587 3376206 ~ 3376413 (+)
G1333263 NA non-coding upstream 56360 3369458 ~ 3371640 (+)
G1333324 NA non-coding downstream 30791 3461101 ~ 3461701 (+)
G1333333 NA non-coding downstream 59621 3489931 ~ 3490975 (+)
G1333403 NA non-coding downstream 150496 3580806 ~ 3581498 (+)
G1333464 NA non-coding downstream 267104 3697414 ~ 3699982 (+)
G1333447 NA non-coding downstream 304395 3734705 ~ 3735812 (+)
G1332826 NA other upstream 196593 3230199 ~ 3231407 (+)
G1332701 NA other upstream 454200 2972808 ~ 2973800 (+)
heatr5b LOC106578753 other upstream 1118433 2295839 ~ 2571759 (+)
G1333963 NA other downstream 909528 4339838 ~ 4341823 (+)
LOC110491218 LOC106578757 other downstream 1304479 4640198 ~ 4973348 (+)
G1334530 NA other downstream 2089630 5519940 ~ 5521230 (+)
G1334592 NA other downstream 2273525 5703835 ~ 5704946 (+)
G1335704 NA other downstream 3160666 6590976 ~ 6591915 (+)

Expression


Co-expression Network