G1333403


Basic Information

Item Value
gene id G1333403
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 3580806 ~ 3581498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1524118
accctattccctacgtagtgcactatcccaaatggaaccctattccctaggtagtgcactatcccaaatggaaccctattccctaggtagtgcactatcccaaatggaaccctattgccTACGCAGTGCactatcccaaatggaaccctattccctaggtagtgcactatcccaaatggaaccctattccctacgtagtgcactatcccaaatggaaccctattccctacgtagtgcactatcccaaatggaaccctattc

Function

NR:

description
PREDICTED: ankyrin-2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1524118 True 261 lncRNA 0.48 2 3580806 3581498

Neighbor

gene id symbol gene type direction distance location
LOC110492796 slx4ip coding upstream 379080 3065065 ~ 3201726 (+)
LOC110492798 LOC106590888 coding upstream 527318 2989203 ~ 3054026 (+)
memo1 LOC106578779 coding upstream 611200 2945412 ~ 2969606 (+)
trnah-gug-6 NA coding upstream 635746 2944989 ~ 2945060 (+)
LOC110491239 LOC106578780 coding upstream 640866 2931169 ~ 2939940 (+)
LOC118939483 NA coding downstream 105045 3686543 ~ 3687093 (+)
LOC118939498 LOC106591840 coding downstream 113100 3694598 ~ 3730931 (+)
btbd3b LOC106578575 coding downstream 284986 3866484 ~ 3902198 (+)
sptlc3 sptlc3 coding downstream 552919 4134417 ~ 4229378 (+)
tasp1 tasp1 coding downstream 663500 4244998 ~ 4337416 (+)
G1333333 NA non-coding upstream 89831 3489931 ~ 3490975 (+)
G1333324 NA non-coding upstream 119105 3461101 ~ 3461701 (+)
G1333310 NA non-coding upstream 150496 3428000 ~ 3430310 (+)
G1333304 NA non-coding upstream 157424 3422910 ~ 3423382 (+)
G1333282 NA non-coding upstream 182512 3388588 ~ 3398294 (+)
G1333464 NA non-coding downstream 115916 3697414 ~ 3699982 (+)
G1333447 NA non-coding downstream 153207 3734705 ~ 3735812 (+)
G1333570 NA non-coding downstream 165744 3747242 ~ 3747512 (+)
G1333574 NA non-coding downstream 169139 3750637 ~ 3751000 (+)
G1333584 NA non-coding downstream 179413 3760911 ~ 3761147 (+)
G1332826 NA other upstream 349399 3230199 ~ 3231407 (+)
G1332701 NA other upstream 607006 2972808 ~ 2973800 (+)
heatr5b LOC106578753 other upstream 1271239 2295839 ~ 2571759 (+)
G1333963 NA other downstream 758340 4339838 ~ 4341823 (+)
LOC110491218 LOC106578757 other downstream 1153291 4640198 ~ 4973348 (+)
G1334530 NA other downstream 1938442 5519940 ~ 5521230 (+)
G1334592 NA other downstream 2122337 5703835 ~ 5704946 (+)
G1335704 NA other downstream 3009478 6590976 ~ 6591915 (+)

Expression


Co-expression Network