G1333570


Basic Information

Item Value
gene id G1333570
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 3747242 ~ 3747512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1524329
gtacacaaaatgaccactgtgactgacccaaacttaaggaaagctatgactatgtacagactcagtgagcatagccttgctattgagaaaggccgccgtaggcagacatggctctcaagagaagacaggcaatGTGCACaccgcccacaaaatgaggtggaaactgagctacacttcctaacctcctgccaaatgtatgaccatattagagacacatatttccctcagattacacagatccacaaagaatttgaaaacaaatccaattttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1524329 True 271 lncRNA 0.44 1 3747242 3747512

Neighbor

gene id symbol gene type direction distance location
LOC118939498 LOC106591840 coding upstream 16311 3694598 ~ 3730931 (+)
LOC118939483 NA coding upstream 60149 3686543 ~ 3687093 (+)
LOC110492796 slx4ip coding upstream 545516 3065065 ~ 3201726 (+)
LOC110492798 LOC106590888 coding upstream 693754 2989203 ~ 3054026 (+)
memo1 LOC106578779 coding upstream 777636 2945412 ~ 2969606 (+)
btbd3b LOC106578575 coding downstream 118972 3866484 ~ 3902198 (+)
sptlc3 sptlc3 coding downstream 386905 4134417 ~ 4229378 (+)
tasp1 tasp1 coding downstream 497486 4244998 ~ 4337416 (+)
LOC110491218 LOC106578757 coding downstream 892686 4640198 ~ 4973348 (+)
LOC110491219 LOC106578758 coding downstream 1228008 4975520 ~ 4978736 (+)
G1333447 NA non-coding upstream 11430 3734705 ~ 3735812 (+)
G1333464 NA non-coding upstream 47260 3697414 ~ 3699982 (+)
G1333403 NA non-coding upstream 165744 3580806 ~ 3581498 (+)
G1333333 NA non-coding upstream 256267 3489931 ~ 3490975 (+)
G1333324 NA non-coding upstream 285541 3461101 ~ 3461701 (+)
G1333574 NA non-coding downstream 3125 3750637 ~ 3751000 (+)
G1333584 NA non-coding downstream 13399 3760911 ~ 3761147 (+)
G1333586 NA non-coding downstream 14620 3762132 ~ 3762372 (+)
G1333593 NA non-coding downstream 23414 3770926 ~ 3771136 (+)
G1333610 NA non-coding downstream 46480 3793992 ~ 3794209 (+)
G1332826 NA other upstream 515835 3230199 ~ 3231407 (+)
G1332701 NA other upstream 773442 2972808 ~ 2973800 (+)
LOC110491239 LOC106578780 other upstream 807302 2931169 ~ 2939940 (+)
heatr5b LOC106578753 other upstream 1437675 2295839 ~ 2571759 (+)
G1333963 NA other downstream 592326 4339838 ~ 4341823 (+)
G1334530 NA other downstream 1772428 5519940 ~ 5521230 (+)
G1334592 NA other downstream 1956323 5703835 ~ 5704946 (+)
G1335704 NA other downstream 2843464 6590976 ~ 6591915 (+)

Expression


Co-expression Network