G1334032


Basic Information

Item Value
gene id G1334032
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 4439598 ~ 4446549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1524976
ctattttttgttgttgttcacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggcaggctagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaacctggtaggctagttgagaacacctttatttaaccaggtgggccagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagcgcgacacagacatggaataaac
>TU1524977
ctattttttgttgttgttcacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggcaggctagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaacctggtaggctagttgagaacacctttatttaaccaggtaggctagctgagaacacctttatttaatcaggtaggctagttgagaacacctttatttaaccaggtaggtcagttgagaacacct

Function

NR:

description
PREDICTED: titin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1524976 False 418 lncRNA 0.41 2 4439598 4446549
TU1524977 True 353 lncRNA 0.40 2 4439598 4441138

Neighbor

gene id symbol gene type direction distance location
tasp1 tasp1 coding upstream 102182 4244998 ~ 4337416 (+)
sptlc3 sptlc3 coding upstream 210220 4134417 ~ 4229378 (+)
btbd3b LOC106578575 coding upstream 537400 3866484 ~ 3902198 (+)
LOC118939498 LOC106591840 coding upstream 708667 3694598 ~ 3730931 (+)
LOC118939483 NA coding upstream 752505 3686543 ~ 3687093 (+)
LOC110491218 LOC106578757 coding downstream 193649 4640198 ~ 4973348 (+)
LOC110491219 LOC106578758 coding downstream 528971 4975520 ~ 4978736 (+)
trnaa-ugc-125 NA coding downstream 658493 5105042 ~ 5105117 (+)
LOC110491235 LOC106578800 coding downstream 709341 5155890 ~ 5196581 (+)
LOC110492801 LOC106589958 coding downstream 750145 5196694 ~ 5243823 (+)
G1334013 NA non-coding upstream 40555 4398710 ~ 4399043 (+)
G1334011 NA non-coding upstream 42221 4397055 ~ 4397377 (+)
G1334010 NA non-coding upstream 43916 4394523 ~ 4395682 (+)
G1334006 NA non-coding upstream 46711 4385561 ~ 4392887 (+)
G1334005 NA non-coding upstream 77840 4361398 ~ 4361758 (+)
G1334069 NA non-coding downstream 102182 4548731 ~ 4550331 (+)
G1334112 NA non-coding downstream 190050 4636599 ~ 4637339 (+)
G1334117 NA non-coding downstream 202492 4649041 ~ 4649494 (+)
G1334152 NA non-coding downstream 246874 4693423 ~ 4693755 (+)
G1334181 NA non-coding downstream 290356 4736905 ~ 4737460 (+)
G1333963 NA other upstream 98730 4339838 ~ 4341823 (+)
G1332826 NA other upstream 1208191 3230199 ~ 3231407 (+)
LOC110492796 slx4ip other upstream 1242347 3065065 ~ 3201726 (+)
G1332701 NA other upstream 1465798 2972808 ~ 2973800 (+)
LOC110491239 LOC106578780 other upstream 1499658 2931169 ~ 2939940 (+)
G1334530 NA other downstream 1073391 5519940 ~ 5521230 (+)
G1334592 NA other downstream 1257286 5703835 ~ 5704946 (+)
G1335704 NA other downstream 2144427 6590976 ~ 6591915 (+)
G1335763 NA other downstream 2317763 6764312 ~ 6768586 (+)

Expression


Co-expression Network