G1335546


Basic Information

Item Value
gene id G1335546
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 6228317 ~ 6231516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1526922
agtatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctacctacacctgttgtattcagcatttcactgtgagatctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctacctacacctgttgtattcagcatttcactgtaaggtctactacacctgctgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1526922 True 303 lncRNA 0.41 2 6228317 6231516

Neighbor

gene id symbol gene type direction distance location
LOC118939486 unc5b coding upstream 11495 6123627 ~ 6216822 (+)
ly6pge LOC106578825 coding upstream 556211 5658729 ~ 5672106 (+)
tacc2 LOC106578818 coding upstream 575446 5536927 ~ 5652871 (+)
LOC110491251 LOC106578785 coding upstream 815683 5398539 ~ 5412634 (+)
LOC110492803 LOC106589963 coding upstream 838293 5351418 ~ 5390024 (+)
slc29a3 slc29a3 coding downstream 21167 6252683 ~ 6289144 (+)
LOC110491277 LOC106578812 coding downstream 101824 6333340 ~ 6357849 (+)
LOC110491273 LOC106578809 coding downstream 129072 6334443 ~ 6382556 (+)
mcu mcu coding downstream 295279 6526795 ~ 6651585 (+)
oit3 oit3 coding downstream 448199 6679715 ~ 6704779 (+)
G1335530 NA non-coding upstream 115613 6111862 ~ 6112704 (+)
G1335460 NA non-coding upstream 266480 5961627 ~ 5961837 (+)
G1335457 NA non-coding upstream 272761 5954986 ~ 5955556 (+)
G1335452 NA non-coding upstream 279621 5947974 ~ 5948696 (+)
G1335548 NA non-coding downstream 2555 6234071 ~ 6234692 (+)
G1335553 NA non-coding downstream 16308 6247824 ~ 6249920 (+)
G1335567 NA non-coding downstream 32638 6264154 ~ 6315330 (+)
G1335571 NA non-coding downstream 93681 6325197 ~ 6325947 (+)
G1334592 NA other upstream 523371 5703835 ~ 5704946 (+)
G1334530 NA other upstream 707087 5519940 ~ 5521230 (+)
LOC110491218 LOC106578757 other upstream 1290638 4640198 ~ 4973348 (+)
G1333963 NA other upstream 1887449 4339838 ~ 4341823 (+)
G1332826 NA other upstream 2996910 3230199 ~ 3231407 (+)
G1335704 NA other downstream 359460 6590976 ~ 6591915 (+)
G1335763 NA other downstream 532796 6764312 ~ 6768586 (+)
kif20ba LOC106589940 other downstream 803358 7024970 ~ 7073332 (+)
G1335921 NA other downstream 827385 7058901 ~ 7059543 (+)
G1336428 NA other downstream 875955 7107471 ~ 7108714 (+)

Expression


Co-expression Network