G1335548


Basic Information

Item Value
gene id G1335548
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 6234071 ~ 6234692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1526926
atccctctgtctctctacgtctcactacggaccatccctctgtctctctacgtctcactacggaccatccctctgtctctctacgtctcactacgtaccatccctctgtctctctacgtctctctacgtaccatccctctgtctctctacgtctcactacgtaccatccctctgtctctctacgtctcactacggaccatccctctgtctctctacgtaccatccctctgtctctctatgtctcactacgtaccat

Function

NR:

description
PREDICTED: uncharacterized protein LOC105006539 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1526926 True 256 lncRNA 0.52 2 6234071 6234692

Neighbor

gene id symbol gene type direction distance location
LOC118939486 unc5b coding upstream 17249 6123627 ~ 6216822 (+)
ly6pge LOC106578825 coding upstream 561965 5658729 ~ 5672106 (+)
tacc2 LOC106578818 coding upstream 581200 5536927 ~ 5652871 (+)
LOC110491251 LOC106578785 coding upstream 821437 5398539 ~ 5412634 (+)
LOC110492803 LOC106589963 coding upstream 844047 5351418 ~ 5390024 (+)
slc29a3 slc29a3 coding downstream 17991 6252683 ~ 6289144 (+)
LOC110491277 LOC106578812 coding downstream 98648 6333340 ~ 6357849 (+)
LOC110491273 LOC106578809 coding downstream 125896 6334443 ~ 6382556 (+)
mcu mcu coding downstream 292103 6526795 ~ 6651585 (+)
oit3 oit3 coding downstream 445023 6679715 ~ 6704779 (+)
G1335546 NA non-coding upstream 2555 6228317 ~ 6231516 (+)
G1335530 NA non-coding upstream 121367 6111862 ~ 6112704 (+)
G1335460 NA non-coding upstream 272234 5961627 ~ 5961837 (+)
G1335457 NA non-coding upstream 278515 5954986 ~ 5955556 (+)
G1335553 NA non-coding downstream 13132 6247824 ~ 6249920 (+)
G1335567 NA non-coding downstream 29462 6264154 ~ 6315330 (+)
G1335571 NA non-coding downstream 90505 6325197 ~ 6325947 (+)
G1335604 NA non-coding downstream 134560 6369252 ~ 6369716 (+)
G1334592 NA other upstream 529125 5703835 ~ 5704946 (+)
G1334530 NA other upstream 712841 5519940 ~ 5521230 (+)
LOC110491218 LOC106578757 other upstream 1296392 4640198 ~ 4973348 (+)
G1333963 NA other upstream 1893203 4339838 ~ 4341823 (+)
G1332826 NA other upstream 3002664 3230199 ~ 3231407 (+)
G1335704 NA other downstream 356284 6590976 ~ 6591915 (+)
G1335763 NA other downstream 529620 6764312 ~ 6768586 (+)
kif20ba LOC106589940 other downstream 800182 7024970 ~ 7073332 (+)
G1335921 NA other downstream 824209 7058901 ~ 7059543 (+)
G1336428 NA other downstream 872779 7107471 ~ 7108714 (+)

Expression


Co-expression Network