G1335553


Basic Information

Item Value
gene id G1335553
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 6247824 ~ 6249920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1526931
tagcctagtggttagagtgtagggacggcaggtagactagtggttagagtgtagggacggcaggtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagcgttgggccagtaaccgaaaggttgctggatcgaatccctgagctgacaaggtaaaaatctgtcgttctgcccctgaacaaagcagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcccctgaacaaagcagttaacccactgttcccctgaacaaagcagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagacca
>TU1526933
tagcctagtggttagagtgtagggacggcaggtagactagtggttagagtgtagggacggcaggtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagcgttgggccagtaaccgaaaggttgctggatcgaatccctgagctgacaaggtaaaaatctgtcgttctgcccctgaacaaagcagtgttcctaggccagttaacccactgttcctagaccagttaacccactgttcctaggccagttaacctactgttcctaga
>TU1526932
ggcaggtagactagtggttagagtgtagggacggcaggtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagcgttgggccagtaaccgaaaggttgctggatcgaatccctgagctgacaaggtaaaaatctgtcgttctgcccctgaacaaagcagtgttcctaggccagttaacccactgttcctagaccagttaacccactgttcctaggccagttaacctactgttcctaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1526931 False 642 lncRNA 0.50 4 6247824 6249920
TU1526933 False 342 lncRNA 0.52 4 6247824 6249492
TU1526932 True 316 lncRNA 0.53 3 6248042 6249492

Neighbor

gene id symbol gene type direction distance location
LOC118939486 unc5b coding upstream 31002 6123627 ~ 6216822 (+)
ly6pge LOC106578825 coding upstream 575718 5658729 ~ 5672106 (+)
tacc2 LOC106578818 coding upstream 594953 5536927 ~ 5652871 (+)
LOC110491251 LOC106578785 coding upstream 835190 5398539 ~ 5412634 (+)
LOC110492803 LOC106589963 coding upstream 857800 5351418 ~ 5390024 (+)
slc29a3 slc29a3 coding downstream 2763 6252683 ~ 6289144 (+)
LOC110491277 LOC106578812 coding downstream 83420 6333340 ~ 6357849 (+)
LOC110491273 LOC106578809 coding downstream 110668 6334443 ~ 6382556 (+)
mcu mcu coding downstream 276875 6526795 ~ 6651585 (+)
oit3 oit3 coding downstream 429795 6679715 ~ 6704779 (+)
G1335468 NA non-coding upstream 1520 5997729 ~ 6246304 (+)
G1335548 NA non-coding upstream 13132 6234071 ~ 6234692 (+)
G1335546 NA non-coding upstream 16308 6228317 ~ 6231516 (+)
G1335530 NA non-coding upstream 135120 6111862 ~ 6112704 (+)
G1335567 NA non-coding downstream 14234 6264154 ~ 6315330 (+)
G1335571 NA non-coding downstream 75277 6325197 ~ 6325947 (+)
G1335604 NA non-coding downstream 119332 6369252 ~ 6369716 (+)
G1335609 NA non-coding downstream 129828 6379748 ~ 6380636 (+)
G1334592 NA other upstream 542878 5703835 ~ 5704946 (+)
G1334530 NA other upstream 726594 5519940 ~ 5521230 (+)
LOC110491218 LOC106578757 other upstream 1310145 4640198 ~ 4973348 (+)
G1333963 NA other upstream 1906956 4339838 ~ 4341823 (+)
G1332826 NA other upstream 3016417 3230199 ~ 3231407 (+)
G1335704 NA other downstream 341056 6590976 ~ 6591915 (+)
G1335763 NA other downstream 514392 6764312 ~ 6768586 (+)
kif20ba LOC106589940 other downstream 784954 7024970 ~ 7073332 (+)
G1335921 NA other downstream 808981 7058901 ~ 7059543 (+)
G1336428 NA other downstream 857551 7107471 ~ 7108714 (+)

Expression


Co-expression Network