G1335571


Basic Information

Item Value
gene id G1335571
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 6325197 ~ 6325947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1526960
CCCACACAGAACAGCTACTGTGTtccctagtcccccccccccacacagaacAGCTACTGTGTTCCCTAGTCCCCCCCccctacaaagtagaaaatagtaaaattaatgaagaactggaatgagtaggtgtccagatgtttgactggtactgtatttacagAGACTGTTACCTGCCAAAAATAAGGGTTTAAATGCATGTGTAAATTTCTTTAAATAATAATTCCCGATTTTCTTATCTCTCAAAGATATAGAACAGTACAAACttagtttagatttttttttcggGGGGGGCTCTATGTAGTGAAACTGTTATTCAATACATGTGTATGGGTTAATAGCATTAAGGATAAACAGTTATCATCAAActcaaatagctaaattatccttGAAATGACCTTGAAACAATGCCATTTAGCTTAGCAGGATGAGGATGTTGGATTGATTCTGAATAACAAATGTTTCTCTCGATTTGTGTGTGTAGGCTAGCTTACTTTCCTAtaaacccgtgtgtgtgtgtgtgtgtgtaccagctcTCCAGCGATGATACCAATGAGGATAGGGTAGTAGGTGTCCACGATCTCTTTACACTGTGCAGCCAGGGTCTTGTCAGGGATCAGGTGACAGGCCTTCTCCAGGACGCCCAGGATCTCACCCTAGAGGACATGAACATCAGCTTAGAGCCCCCCAGCCTCAGACCCCCACTATGTGGagcgatgccccccccccc

Function

NR:

description
prosaposin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1526960 True 727 lncRNA 0.44 2 6325197 6325947

Neighbor

gene id symbol gene type direction distance location
slc29a3 slc29a3 coding upstream 36053 6252683 ~ 6289144 (+)
LOC118939486 unc5b coding upstream 108375 6123627 ~ 6216822 (+)
ly6pge LOC106578825 coding upstream 653091 5658729 ~ 5672106 (+)
tacc2 LOC106578818 coding upstream 672326 5536927 ~ 5652871 (+)
LOC110491251 LOC106578785 coding upstream 912563 5398539 ~ 5412634 (+)
LOC110491277 LOC106578812 coding downstream 7393 6333340 ~ 6357849 (+)
LOC110491273 LOC106578809 coding downstream 34641 6334443 ~ 6382556 (+)
mcu mcu coding downstream 200848 6526795 ~ 6651585 (+)
oit3 oit3 coding downstream 353768 6679715 ~ 6704779 (+)
kif20ba LOC106589940 coding downstream 699023 7024970 ~ 7073332 (+)
G1335567 NA non-coding upstream 9867 6264154 ~ 6315330 (+)
G1335553 NA non-coding upstream 75277 6247824 ~ 6249920 (+)
G1335548 NA non-coding upstream 90505 6234071 ~ 6234692 (+)
G1335546 NA non-coding upstream 93681 6228317 ~ 6231516 (+)
G1335604 NA non-coding downstream 43305 6369252 ~ 6369716 (+)
G1335609 NA non-coding downstream 53801 6379748 ~ 6380636 (+)
G1335613 NA non-coding downstream 60582 6386529 ~ 6473988 (+)
G1335618 NA non-coding downstream 64903 6390850 ~ 6391132 (+)
G1334592 NA other upstream 620251 5703835 ~ 5704946 (+)
G1334530 NA other upstream 803967 5519940 ~ 5521230 (+)
LOC110491218 LOC106578757 other upstream 1387518 4640198 ~ 4973348 (+)
G1333963 NA other upstream 1984329 4339838 ~ 4341823 (+)
G1332826 NA other upstream 3093790 3230199 ~ 3231407 (+)
G1335704 NA other downstream 265029 6590976 ~ 6591915 (+)
G1335763 NA other downstream 438365 6764312 ~ 6768586 (+)
G1335921 NA other downstream 732954 7058901 ~ 7059543 (+)
G1336428 NA other downstream 781524 7107471 ~ 7108714 (+)

Expression


Co-expression Network