G1335613


Basic Information

Item Value
gene id G1335613
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 6386529 ~ 6473988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1527017
caaacttttgactggtactgtatgtataatatATACTTTActtcccttttctccccaatttcatgatccCCAATTGGGAGTTAAGCGCTTGTCTCAACTTTAGACTCACTCTCTGGCTGTTTCTCGTTGGGGGTGATGGAACGGACAAAGTCCTGTGGAGTCATGTAGACCTCGGCATCTCCGTGCTCACTGATGATCTTCAGCGTGGCGAAGTAACGGAAGATCTTGTCTGGAGTGGAGTAGGCTCTAATCCTATTCTCATACTCCATCAcctggggaggggggagagagagagaggtactgtcAGTAGGGCTGGACGCTA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1527017 True 322 lncRNA 0.48 2 6386529 6473988

Neighbor

gene id symbol gene type direction distance location
LOC110491273 LOC106578809 coding upstream 3973 6334443 ~ 6382556 (+)
LOC110491277 LOC106578812 coding upstream 28680 6333340 ~ 6357849 (+)
slc29a3 slc29a3 coding upstream 97385 6252683 ~ 6289144 (+)
LOC118939486 unc5b coding upstream 169707 6123627 ~ 6216822 (+)
ly6pge LOC106578825 coding upstream 714423 5658729 ~ 5672106 (+)
mcu mcu coding downstream 52807 6526795 ~ 6651585 (+)
oit3 oit3 coding downstream 205727 6679715 ~ 6704779 (+)
kif20ba LOC106589940 coding downstream 550982 7024970 ~ 7073332 (+)
zgc:65997 LOC106578833 coding downstream 651759 7125747 ~ 7128548 (+)
pank1a LOC106578834 coding downstream 657059 7131047 ~ 7156797 (+)
G1335609 NA non-coding upstream 5893 6379748 ~ 6380636 (+)
G1335604 NA non-coding upstream 16813 6369252 ~ 6369716 (+)
G1335571 NA non-coding upstream 60582 6325197 ~ 6325947 (+)
G1335567 NA non-coding upstream 71199 6264154 ~ 6315330 (+)
G1335653 NA non-coding downstream 7792 6481780 ~ 6573646 (+)
G1335663 NA non-coding downstream 32265 6506253 ~ 6509089 (+)
G1335676 NA non-coding downstream 55250 6529238 ~ 6529840 (+)
G1335679 NA non-coding downstream 64323 6538311 ~ 6538918 (+)
G1335680 NA non-coding downstream 65461 6539449 ~ 6540326 (+)
G1334592 NA other upstream 681583 5703835 ~ 5704946 (+)
G1334530 NA other upstream 865299 5519940 ~ 5521230 (+)
LOC110491218 LOC106578757 other upstream 1448850 4640198 ~ 4973348 (+)
G1333963 NA other upstream 2045661 4339838 ~ 4341823 (+)
G1332826 NA other upstream 3155122 3230199 ~ 3231407 (+)
G1335704 NA other downstream 116988 6590976 ~ 6591915 (+)
G1335763 NA other downstream 290324 6764312 ~ 6768586 (+)
G1335921 NA other downstream 584913 7058901 ~ 7059543 (+)
G1336428 NA other downstream 633483 7107471 ~ 7108714 (+)

Expression


Co-expression Network