XLOC_003258 (si:dkey-23f9.9)


Basic Information

Item Value
gene id XLOC_003258
gene name si:dkey-23f9.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11387509 ~ 11389462 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006427
tttttgtgttgttttgaactccGCTCTGTCATTGGCATCTGATCTCGGCGTTCTTCGTGGCAACTTATTCGCAGACTATTGATATTATTGATTGTTGGATACATCGATTGATCGTCTGCTTCTCCCATCATTCAGGTTTGAATCTTGTTATCACACTGTGTTTTGTGTTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCCACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCACAAGCGCATCAggaggagcacagggattccACGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGATGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTCCTGCCAGACCAAGCCGCtgtcctcctcttcctcagctgGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTTCACCAGAGATGCACGGCGACCAGAAGAGACCACGTCACTGAGAGACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCATAAA
>TCONS_00006428
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCCACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcaggtga

Function

symbol description
si:dkey-23f9.9 Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to act upstream of or within mRNA processing and protein ubiquitination. Predicted to be located in nucleus.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-41 Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to act upstream of or within mRNA processing and protein ubiquitination. Predicted to be located in nucleus.

Ensembl:

ensembl_id ENSDARG00000116521

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006427 False 1011 mRNA 0.50 6 11387509 11389462
TCONS_00006428 True 429 mRNA 0.51 4 11387682 11388681

Neighbor

gene id symbol gene type direction distance location
XLOC_003252 BX324177.5 coding upstream 6622 11353459 ~ 11380887 (+)
XLOC_003256 si:dkey-23f9.8 coding upstream 11565 11374021 ~ 11375944 (+)
XLOC_003254 si:dkey-23f9.7 coding upstream 25052 11360641 ~ 11362457 (+)
XLOC_003253 NA coding upstream 27794 11359421 ~ 11359715 (+)
XLOC_003251 si:dkey-23f9.6 coding upstream 38804 11347031 ~ 11348705 (+)
XLOC_003259 si:dkey-23f9.12 coding downstream 18430 11407892 ~ 11409744 (+)
XLOC_003261 si:dkey-23f9.13 coding downstream 29724 11419186 ~ 11421106 (+)
XLOC_003263 si:dkey-23f9.11 coding downstream 41090 11430552 ~ 11432479 (+)
XLOC_003268 NA coding downstream 114552 11504014 ~ 11513985 (+)
XLOC_003269 CR556712.1 coding downstream 198616 11588078 ~ 11590676 (+)
XLOC_003257 BX324177.13 misc upstream 851 11386362 ~ 11386658 (+)
XLOC_003255 BX324177.14 misc upstream 14327 11372886 ~ 11373182 (+)
XLOC_003250 BX324177.11 misc upstream 41410 11345803 ~ 11346099 (+)
XLOC_003260 BX324177.2 misc downstream 28571 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 39931 11429393 ~ 11429689 (+)
XLOC_003264 BX324177.22 misc downstream 51998 11441460 ~ 11441756 (+)
XLOC_003265 BX324177.12 misc downstream 60693 11450155 ~ 11450442 (+)
XLOC_003266 BX324177.20 misc downstream 71344 11460806 ~ 11461102 (+)
XLOC_003241 NA non-coding upstream 714501 10669135 ~ 10673008 (+)
XLOC_003239 CT990625.1 non-coding upstream 850106 10535456 ~ 10537403 (+)
XLOC_003238 BX005472.1 non-coding upstream 1488879 9898513 ~ 9898630 (+)
XLOC_003271 CR848705.1 non-coding downstream 402946 11792408 ~ 11796299 (+)
XLOC_003273 NA non-coding downstream 419761 11809223 ~ 11823154 (+)
XLOC_003274 NA non-coding downstream 430902 11820364 ~ 11854446 (+)

Expression


Co-expression Network