G1335742


Basic Information

Item Value
gene id G1335742
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 6706565 ~ 6710420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1527179
aataccttattgacatcaatattcagaccctttgctatgagactcgacattgagctcaggtgcatcctgtttccattgatcatccttaagatttttctacaacttggagtccacctgtggtaaattatttggaaaggcacacacctgtctatatacggtcccacagttgacagtgcaaaaaccaagcgaTGAGGAATTGTCAGTAGCActcctagacaggattgtgtcgaggcacagatctggggaagggtaccaaaacatttctgcagcattgaaggtccacaagaacacagtggcctccattattattaaatgtaagaagtttggaaccatcaagactcttcctagagctggccgcccggccaaactgagcaatcgggggagaagggccttggtcagggaggtgaccgagaacctgatggtcactctgacagagctccagagtttctctgtggagatgggagaatcttccactgcagtactccaccaatcaggcctttatgatagtggCCAAatggaatccactcctcagtaaaaggcacataacagcccacttgaagtttgcctaaaggcacctaaaggtctCAGATgagatgagaaacaagattctctgatctgatgaaaccaagattagactctttggcctgaatgccaagtgtgacgtctggaggaaacctggcaccattcctacggtgaagcatggtggtgacagcatcatgctgtggggatgcttttcagtggcagggaatgggagactagtcaggatcgagggaaagatgaacggagcaaagtacagagatatccttaatgaaaacttgctcaggacctcagattggggtgaaggttcaccttccaacaggacaacgaccctaagcacacagcctagacaacgcaggagtggcttcgggacaagtctctgaatgtccttgagtggcccagccagagcccggacttgaaccagatcgaacatctctggagagatctgaaaatagctgtgcagcgacactccccatccaacctgacagagcttgagaggatctgtgaAGAAGAATGGGATAGACTCCCCCAAAAAAGGTGTGCCCAGCtcgtagcatcatacccaagaagactcgatgctgccaaaggtgcttcaaaaaagtactgaggaaagggtctgaatttgTAAATCTGATATTTCTGtgtataaaatgaaataaaaaaatacattctaaACCTGTTCTTGCTTttttttatggggtattgtgatgtcattatggggtattgtgatgtcattatggggtattgtgatgtcattatggggtattgtgatgtcattattgtgtgtgaattgatgagggggaaaaaaactatttaatacattttagaataatgctgtaacgtaacaaaatgtgaaaaaagtcaaggggtctgaatactttcagaatgcagtGTAAGTGTAGTAAGAACATATGTAATATCCATGGACAAACAGTGTAATTTACAGTATATAACCGATGTATGGAGAGCTAGCCTGACTGCCAGTCTGTTTATGCTCTCTTGCCAACTTCTTATAGAGTTGTCGTGTTTGGCTTGACAAGAGAGCAGAACGACTGACACCCCGAGTTAATAAAGACAGCAGAACGACTGACACCCCAGGTTGATAAAGAGAGCAGAACGACTGACACCCCAGGTTAATAAAGAGAGCAGAACGACTGACACCCCAGGTTAATAAAGAGAGCAGAACGACTGACACCCCGAGCTCATTGAAAAACCCTGATGAGTATTAACTGAAAACATGTGGTGTATCGTGACTAGAAATCACCACTGTATACCACCACTGTATACCactactctataccaccactctataccaccactgtatACCACCACTGTAAACCACTACTCTATACCACTACTGCataccactactgtataccactactgtataccactacagtataccactactgTATACCACTACTGTACCTACAGTACCTTAAGTGAACTTATCACATCAACATTGTATAATTagttattcatttattaatcGAAAAGTAACACAAAAAAAGCCTGATATTCCCCATCAGTCAATGGACAGCAACACGCATAATAACATACAGCGCAACATAACACACTTATTTGTGCGTAGTGGAAGTAGCCAGTCAGTAACAGCACAGGTCCAACTAActggtgtttgtgttgtgttagacTAGGTTATTACGGGAGTGcgtccctattccctacaaagtgcactactttcgaccagagcctCATGATgccgtggtcaaaagtagtgcactttgtagggaataggttgccgtTTGGGACATGGGCTTGTTTTCATACAAAGTGCACATCAAATTGCCCCAGTTAGCAGGTACAGTTTGTATTCTTATGTGGGATATGATGCTGCCTGAAAGGTCTGTTCTCTATCAGGattttgtttttttggggggtttgaggtaatgttaataaaataataacacaataataTGTTAAA

Function

NR:

description
PREDICTED: zinc finger protein 135-like isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1527179 True 2479 lncRNA 0.43 2 6706565 6710420

Neighbor

gene id symbol gene type direction distance location
oit3 oit3 coding upstream 1786 6679715 ~ 6704779 (+)
mcu mcu coding upstream 54980 6526795 ~ 6651585 (+)
LOC110491273 LOC106578809 coding upstream 324009 6334443 ~ 6382556 (+)
LOC110491277 LOC106578812 coding upstream 348716 6333340 ~ 6357849 (+)
slc29a3 slc29a3 coding upstream 417421 6252683 ~ 6289144 (+)
kif20ba LOC106589940 coding downstream 314550 7024970 ~ 7073332 (+)
zgc:65997 LOC106578833 coding downstream 415327 7125747 ~ 7128548 (+)
pank1a LOC106578834 coding downstream 420627 7131047 ~ 7156797 (+)
LOC110491290 cisd1 coding downstream 454016 7164436 ~ 7171710 (+)
cnrip1b LOC106578837 coding downstream 472985 7183405 ~ 7191698 (+)
G1335741 NA non-coding upstream 125 6705343 ~ 6706440 (+)
G1335731 NA non-coding upstream 59897 6641594 ~ 6646668 (+)
G1335729 NA non-coding upstream 66382 6639594 ~ 6640183 (+)
G1335727 NA non-coding upstream 70472 6635305 ~ 6636093 (+)
G1335723 NA non-coding upstream 77753 6628556 ~ 6628812 (+)
G1335771 NA non-coding downstream 44005 6754425 ~ 6754972 (+)
G1335763 NA non-coding downstream 53892 6764312 ~ 6768586 (+)
G1335783 pde10a non-coding downstream 69506 6779926 ~ 6781543 (+)
G1335784 NA non-coding downstream 69839 6780259 ~ 6781102 (+)
G1335803 NA non-coding downstream 100410 6810830 ~ 6811392 (+)
G1335704 NA other upstream 114650 6590976 ~ 6591915 (+)
G1334592 NA other upstream 1001619 5703835 ~ 5704946 (+)
G1334530 NA other upstream 1185335 5519940 ~ 5521230 (+)
LOC110491218 LOC106578757 other upstream 1768886 4640198 ~ 4973348 (+)
G1333963 NA other upstream 2365697 4339838 ~ 4341823 (+)
G1335921 NA other downstream 348481 7058901 ~ 7059543 (+)
G1336428 NA other downstream 397051 7107471 ~ 7108714 (+)

Expression


Co-expression Network