XLOC_003259 (si:dkey-23f9.12)


Basic Information

Item Value
gene id XLOC_003259
gene name si:dkey-23f9.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11407892 ~ 11409744 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006429
CAGACTATTGATATTATTGATCGTTGGATACATCGATTGATCGCCTGCTGCTCCCTTCATTCAGGTTTGACCCTTGCTATCACACTGTGTTTTGTGTTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCCACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGAATACACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgaGAATCTGGCTGAGGCACAGGCATCAGAGGAGGACAAGCTAAAAGCGGTGATGTACCAGTCCAGTCTGTGCTACTACTCCAGCAGTGAGGCCATGACACTGCTTGGGCTTCTTCCACCCAACTATGTCTGCTTTCACTGTGGGATCCCAGGACACCACATTAGGCACTGCCCCTCTAAAGGGggcagcagctctgctccGCATAAGCGCATCAggaggagcacagggattccACGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGATGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTCCTGCCAGACCAAGCCGCtgtcctcctcttcctcagctgGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTTCACCAGAGATGCATGGCGACCAGAAGAGACCACGTCACTGAGAGACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCATAAA
>TCONS_00006430
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCCACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGAATACACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgaGAATCTGGCTGAGGCACAGGCATCAGAGGAGGACAAGCTAAAAGCGGTGATGTACCAGTCCAGTCTGTGCTACTACTCCAGCAGGTGA

Function

symbol description
si:dkey-23f9.12 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-30 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000094335

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006429 False 1037 mRNA 0.51 7 11407892 11409744
TCONS_00006430 True 429 mRNA 0.51 4 11407994 11408963

Neighbor

gene id symbol gene type direction distance location
XLOC_003258 si:dkey-23f9.9 coding upstream 18430 11387509 ~ 11389462 (+)
XLOC_003252 BX324177.5 coding upstream 27005 11353459 ~ 11380887 (+)
XLOC_003256 si:dkey-23f9.8 coding upstream 31948 11374021 ~ 11375944 (+)
XLOC_003254 si:dkey-23f9.7 coding upstream 45435 11360641 ~ 11362457 (+)
XLOC_003253 NA coding upstream 48177 11359421 ~ 11359715 (+)
XLOC_003261 si:dkey-23f9.13 coding downstream 9442 11419186 ~ 11421106 (+)
XLOC_003263 si:dkey-23f9.11 coding downstream 20808 11430552 ~ 11432479 (+)
XLOC_003268 NA coding downstream 94270 11504014 ~ 11513985 (+)
XLOC_003269 CR556712.1 coding downstream 178334 11588078 ~ 11590676 (+)
XLOC_003270 jupa coding downstream 309831 11719575 ~ 11781911 (+)
XLOC_003257 BX324177.13 misc upstream 21234 11386362 ~ 11386658 (+)
XLOC_003255 BX324177.14 misc upstream 34710 11372886 ~ 11373182 (+)
XLOC_003250 BX324177.11 misc upstream 61793 11345803 ~ 11346099 (+)
XLOC_003260 BX324177.2 misc downstream 8289 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 19649 11429393 ~ 11429689 (+)
XLOC_003264 BX324177.22 misc downstream 31716 11441460 ~ 11441756 (+)
XLOC_003265 BX324177.12 misc downstream 40411 11450155 ~ 11450442 (+)
XLOC_003266 BX324177.20 misc downstream 51062 11460806 ~ 11461102 (+)
XLOC_003241 NA non-coding upstream 734884 10669135 ~ 10673008 (+)
XLOC_003239 CT990625.1 non-coding upstream 870489 10535456 ~ 10537403 (+)
XLOC_003238 BX005472.1 non-coding upstream 1509262 9898513 ~ 9898630 (+)
XLOC_003271 CR848705.1 non-coding downstream 382664 11792408 ~ 11796299 (+)
XLOC_003273 NA non-coding downstream 399479 11809223 ~ 11823154 (+)
XLOC_003274 NA non-coding downstream 410620 11820364 ~ 11854446 (+)

Expression


Co-expression Network