XLOC_003261 (si:dkey-23f9.13)


Basic Information

Item Value
gene id XLOC_003261
gene name si:dkey-23f9.13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11419186 ~ 11421106 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006432
tttttgtgttgttttgaactccGCTCTGTCATTGGCATCTGATCTCGGCGTTCTTCGTGGCAACTTATTCGCagattattgatattattgattGTTGGATACATCGATTGATCGCCTGCTGCTCCCTTCATTCAGGTTTGACCCTTGCTATCACACTGTGTTTTGTGTTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCCACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGAATACACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagTGAGGCCATGACACTGCTTGGGCTTCTTCCACCCAACTATGTCTGCTTCCACTGTGGGATCCCAGGACACCACATTAGGCACTGCCCCTCTAAAGGGggcagcagctctgctccGCACAAGCGCATCAggaggagcacagggattccACGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCGTCTCCTGCCAGACCAAGCCGCtgtcctcctcttcctcagctgGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTCCACCAGAGACGCACGGCGACCAGAAGAGACCACGTCACTGAGAGACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCATAAA
>TCONS_00006433
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCCACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGAATACACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcaggtga

Function

symbol description
si:dkey-23f9.13 Predicted to enable nucleic acid binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to act upstream of or within mRNA processing and protein ubiquitination. Predicted to be located in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000088552

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006432 False 1108 mRNA 0.51 7 11419186 11421106
TCONS_00006433 True 429 mRNA 0.51 4 11419359 11420325

Neighbor

gene id symbol gene type direction distance location
XLOC_003259 si:dkey-23f9.12 coding upstream 9442 11407892 ~ 11409744 (+)
XLOC_003258 si:dkey-23f9.9 coding upstream 29724 11387509 ~ 11389462 (+)
XLOC_003252 BX324177.5 coding upstream 38299 11353459 ~ 11380887 (+)
XLOC_003263 si:dkey-23f9.11 coding downstream 9446 11430552 ~ 11432479 (+)
XLOC_003268 NA coding downstream 82908 11504014 ~ 11513985 (+)
XLOC_003269 CR556712.1 coding downstream 166972 11588078 ~ 11590676 (+)
XLOC_003270 jupa coding downstream 298469 11719575 ~ 11781911 (+)
XLOC_003271 CR848705.1 coding downstream 371302 11792408 ~ 11796299 (+)
XLOC_003260 BX324177.2 misc upstream 863 11418033 ~ 11418323 (+)
XLOC_003257 BX324177.13 misc upstream 32528 11386362 ~ 11386658 (+)
XLOC_003255 BX324177.14 misc upstream 46004 11372886 ~ 11373182 (+)
XLOC_003250 BX324177.11 misc upstream 73087 11345803 ~ 11346099 (+)
XLOC_003262 BX324177.15 misc downstream 8287 11429393 ~ 11429689 (+)
XLOC_003264 BX324177.22 misc downstream 20354 11441460 ~ 11441756 (+)
XLOC_003265 BX324177.12 misc downstream 29049 11450155 ~ 11450442 (+)
XLOC_003266 BX324177.20 misc downstream 39700 11460806 ~ 11461102 (+)
XLOC_003267 BX324177.19 misc downstream 41200 11462306 ~ 11462602 (+)
XLOC_003253 NA non-coding upstream 59471 11359421 ~ 11359715 (+)
XLOC_003241 NA non-coding upstream 746178 10669135 ~ 10673008 (+)
XLOC_003239 CT990625.1 non-coding upstream 881783 10535456 ~ 10537403 (+)
XLOC_003238 BX005472.1 non-coding upstream 1520556 9898513 ~ 9898630 (+)
XLOC_003273 NA non-coding downstream 388117 11809223 ~ 11823154 (+)
XLOC_003274 NA non-coding downstream 399258 11820364 ~ 11854446 (+)

Expression


Co-expression Network