G1339048


Basic Information

Item Value
gene id G1339048
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 9705468 ~ 9705961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1531084
gctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctgtctctctctctctctctctctctgtgtgtctctcgttGTGTGTCTCTCGTtgtgtctccctctgtgtctctctgtgtctctctctctctctctctctgtgtctctctctgtctctctctctctgtctctctgtgtctctctgcatcgctctgtctgtctgtctgtctctctgtctgtctctctctctgtctgtctctctctctgtctgtctgtctctctctctctctctctctctctctctctctctctctctctctaagtaaGGACACACTGTCCTGGCTGCCACATTATATACAGCACCCTGCTCTCAACTTCttctgccctcctccctctctctcatctctcttgctctatctcaattcaattcaaaggtctttattggcatgggaaacatatgttaacattgccataccaagtgaaatagaaaataaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1531084 True 494 lncRNA 0.47 1 9705468 9705961

Neighbor

gene id symbol gene type direction distance location
LOC118939487 ogfod3 coding upstream 449592 9238981 ~ 9255876 (+)
LOC110491327 LOC106578881 coding upstream 468093 9234025 ~ 9237375 (+)
LOC110491323 NA coding upstream 533989 9163483 ~ 9171479 (+)
LOC110491321 mrpl38 coding upstream 561796 9084767 ~ 9143672 (+)
LOC110491320 LOC106578876 coding upstream 574075 9124217 ~ 9131393 (+)
galk1 galk1 coding downstream 521257 10227218 ~ 10237422 (+)
llgl2 LOC106578897 coding downstream 531593 10237554 ~ 10270791 (+)
myo15b LOC106578894 coding downstream 583892 10289853 ~ 10320827 (+)
LOC110491336 LOC106578893 coding downstream 624117 10330078 ~ 10373090 (+)
LOC110491338 LOC106589448 coding downstream 672862 10378823 ~ 10407995 (+)
G1339047 NA non-coding upstream 665 9704478 ~ 9704803 (+)
G1339040 NA non-coding upstream 22278 9682693 ~ 9683190 (+)
G1339033 LOC106578905 non-coding upstream 36014 9668149 ~ 9669454 (+)
G1339015 NA non-coding upstream 82391 9622670 ~ 9623077 (+)
G1339006 NA non-coding upstream 104378 9600881 ~ 9601090 (+)
G1339053 NA non-coding downstream 12144 9718105 ~ 9718524 (+)
G1339057 NA non-coding downstream 21405 9727366 ~ 9728379 (+)
G1339058 NA non-coding downstream 23594 9729555 ~ 9729794 (+)
G1339068 NA non-coding downstream 36400 9742361 ~ 9742760 (+)
G1339078 LOC106578905 non-coding downstream 56498 9762459 ~ 9762770 (+)
G1339045 NA other upstream 3088 9701975 ~ 9702380 (+)
G1339018 NA other upstream 79068 9625939 ~ 9626400 (+)
G1338571 NA other upstream 522295 9178047 ~ 9183173 (+)
LOC110492817 LOC106578874 other upstream 611104 9091144 ~ 9108207 (+)
G1338523 NA other upstream 642322 9060652 ~ 9063146 (+)
G1339525 NA other downstream 353917 10059878 ~ 10060130 (+)
G1341172 NA other downstream 2075767 11781728 ~ 11782891 (+)
LOC110492879 NA other downstream 2251565 11952562 ~ 11958858 (+)
G1341689 NA other downstream 2517812 12223773 ~ 12229068 (+)
LOC110491388 LOC106578938 other downstream 2686993 12392917 ~ 12396813 (+)

Expression


Co-expression Network