G1339078 (LOC106578905)


Basic Information

Item Value
gene id G1339078
gene name LOC106578905
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 9762459 ~ 9762770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1531114
TAGTATGTCAGGGGCCAGGTCTATGGACCCCCTGGTCTCCACAGACTCCATCCTCCTGTGTTGATGTTGGGACTGGGACATGGAGTCGGTACGACACAGGGACACATCATCTCCCTCCGatgtcccccctcctcccccctcatcaTCCTCCGAACTGGACCCACCCTCTCCGGAGAGGAGCGACCGTCGTTCGCCAGACTGACGCTTTGTTCGTTTGAGCGAAGGAGCACGGCCTACGCTGTTCCAGCTTGATCTACGGCTGGTCCAGCCAGAGGCGGAGCTCCACGGGGCGTAAGGGGAGGTGCTACGGGC

Function

NR:

description
PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1G-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1531114 True 312 lncRNA 0.62 1 9762459 9762770

Neighbor

gene id symbol gene type direction distance location
LOC118939487 ogfod3 coding upstream 506583 9238981 ~ 9255876 (+)
LOC110491327 LOC106578881 coding upstream 525084 9234025 ~ 9237375 (+)
LOC110491323 NA coding upstream 590980 9163483 ~ 9171479 (+)
LOC110491321 mrpl38 coding upstream 618787 9084767 ~ 9143672 (+)
LOC110491320 LOC106578876 coding upstream 631066 9124217 ~ 9131393 (+)
galk1 galk1 coding downstream 464448 10227218 ~ 10237422 (+)
llgl2 LOC106578897 coding downstream 474784 10237554 ~ 10270791 (+)
myo15b LOC106578894 coding downstream 527083 10289853 ~ 10320827 (+)
LOC110491336 LOC106578893 coding downstream 567308 10330078 ~ 10373090 (+)
LOC110491338 LOC106589448 coding downstream 616053 10378823 ~ 10407995 (+)
G1339068 NA non-coding upstream 19699 9742361 ~ 9742760 (+)
G1339058 NA non-coding upstream 32665 9729555 ~ 9729794 (+)
G1339057 NA non-coding upstream 34080 9727366 ~ 9728379 (+)
G1339053 NA non-coding upstream 43935 9718105 ~ 9718524 (+)
G1339048 NA non-coding upstream 56498 9705468 ~ 9705961 (+)
G1339079 NA non-coding downstream 112 9762882 ~ 9764641 (+)
G1339083 NA non-coding downstream 14478 9777248 ~ 9777486 (+)
G1339091 NA non-coding downstream 29241 9792011 ~ 9792229 (+)
G1339098 NA non-coding downstream 45858 9808628 ~ 9808850 (+)
G1339103 NA non-coding downstream 51510 9814280 ~ 9814506 (+)
G1339045 NA other upstream 60079 9701975 ~ 9702380 (+)
G1339018 NA other upstream 136059 9625939 ~ 9626400 (+)
G1338571 NA other upstream 579286 9178047 ~ 9183173 (+)
LOC110492817 LOC106578874 other upstream 668095 9091144 ~ 9108207 (+)
G1338523 NA other upstream 699313 9060652 ~ 9063146 (+)
G1339525 NA other downstream 297108 10059878 ~ 10060130 (+)
G1341172 NA other downstream 2018958 11781728 ~ 11782891 (+)
LOC110492879 NA other downstream 2194756 11952562 ~ 11958858 (+)
G1341689 NA other downstream 2461003 12223773 ~ 12229068 (+)
LOC110491388 LOC106578938 other downstream 2630184 12392917 ~ 12396813 (+)

Expression


Co-expression Network