Gene
RNA
| Item | Value |
|---|---|
| gene id | G1339268 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 9795847 ~ 9796354 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: retrotransposon-like protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1531329 | True | 508 | lncRNA | 0.53 | 1 | 9795847 | 9796354 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110491329 | LOC106578906 | coding | downstream | 197206 | 9592672 ~ 9598641 (-) |
| LOC110491328 | LOC106578885 | coding | downstream | 523102 | 9255867 ~ 9272745 (-) |
| LOC110491326 | narf | coding | downstream | 562849 | 9209893 ~ 9232998 (-) |
| mmp25b | mmp25 | coding | downstream | 599675 | 9175791 ~ 9196172 (-) |
| LOC110491322 | LOC106589467 | coding | downstream | 657149 | 9133541 ~ 9138698 (-) |
| LOC118939488 | NA | coding | upstream | 155409 | 9951763 ~ 9953398 (-) |
| LOC110491330 | LOC106578899 | coding | upstream | 371145 | 10167499 ~ 10171071 (-) |
| LOC118939504 | LOC106578899 | coding | upstream | 385542 | 10181896 ~ 10185879 (-) |
| LOC110492820 | LOC106578899 | coding | upstream | 399338 | 10195692 ~ 10199662 (-) |
| LOC118939505 | LOC106578899 | coding | upstream | 413122 | 10209476 ~ 10213292 (-) |
| G1339264 | NA | non-coding | downstream | 6372 | 9789230 ~ 9789475 (-) |
| G1339262 | NA | non-coding | downstream | 11018 | 9784616 ~ 9784829 (-) |
| G1339259 | NA | non-coding | downstream | 15114 | 9780518 ~ 9780733 (-) |
| G1339257 | NA | non-coding | downstream | 17246 | 9778391 ~ 9778601 (-) |
| G1339256 | NA | non-coding | downstream | 18005 | 9777623 ~ 9777842 (-) |
| G1339279 | NA | non-coding | upstream | 17911 | 9814265 ~ 9814548 (-) |
| G1339280 | NA | non-coding | upstream | 18416 | 9814770 ~ 9815560 (-) |
| G1339388 | NA | non-coding | upstream | 33992 | 9830346 ~ 9830906 (-) |
| G1339440 | NA | non-coding | upstream | 138570 | 9934924 ~ 9935277 (-) |
| G1339451 | NA | non-coding | upstream | 161753 | 9958107 ~ 9958431 (-) |
| G1339219 | NA | other | downstream | 92216 | 9703116 ~ 9703631 (-) |
| G1338014 | NA | other | downstream | 1325703 | 8467208 ~ 8470144 (-) |
| G1337783 | NA | other | downstream | 1382780 | 8412771 ~ 8413067 (-) |
| LOC110492875 | LOC106578856 | other | downstream | 1989931 | 7777876 ~ 7806345 (-) |
| G1339765 | NA | other | upstream | 466920 | 10263274 ~ 10263742 (-) |
| G1340519 | NA | other | upstream | 1227748 | 11024102 ~ 11025202 (-) |
| LOC110491342 | LOC106578908 | other | upstream | 1856686 | 11652429 ~ 11667766 (-) |
| G1341480 | LOC106578921 | other | upstream | 2193890 | 11946567 ~ 12097768 (-) |
| G1342941 | NA | other | upstream | 2902632 | 12698986 ~ 12700168 (-) |
