G1339529 (LOC106562530)


Basic Information

Item Value
gene id G1339529
gene name LOC106562530
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 10063099 ~ 10063499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1531600
gcatctctcctccggaccatacccctcccactccatgaggtactgaaggcccctcgcccgacgcctcgaGTCCAGGATCGCTCGAACAgcatacgccggggccccctcgatgtccagagggggcggaggaagcTCCCACAACACAGACTCCTagagtggaccagccaccaccggcctgaggagagacacatggaacgagggattAATACGGTAAtctgggggaagctgtaacctgtagcaTACCtcattcagtctcctcaggactttgaatggcaccacaaactgcggacccagcttccggcagggcaagcggaggggcaggttttgggtcgagagccagacccggggcctcactgcggtggcggtcggtGCTCGCCTTCTACCGCCTCACGGCCCGTTGC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1531600 True 401 lncRNA 0.63 1 10063099 10063499

Neighbor

gene id symbol gene type direction distance location
LOC118939487 ogfod3 coding upstream 807223 9238981 ~ 9255876 (+)
LOC110491327 LOC106578881 coding upstream 825724 9234025 ~ 9237375 (+)
LOC110491323 NA coding upstream 891620 9163483 ~ 9171479 (+)
LOC110491321 mrpl38 coding upstream 919427 9084767 ~ 9143672 (+)
LOC110491320 LOC106578876 coding upstream 931706 9124217 ~ 9131393 (+)
galk1 galk1 coding downstream 163719 10227218 ~ 10237422 (+)
llgl2 LOC106578897 coding downstream 174055 10237554 ~ 10270791 (+)
myo15b LOC106578894 coding downstream 226354 10289853 ~ 10320827 (+)
LOC110491336 LOC106578893 coding downstream 266579 10330078 ~ 10373090 (+)
LOC110491338 LOC106589448 coding downstream 315324 10378823 ~ 10407995 (+)
G1339499 NA non-coding upstream 23686 10039134 ~ 10039413 (+)
G1339496 NA non-coding upstream 26740 10033035 ~ 10036359 (+)
G1339381 NA non-coding upstream 43340 10019216 ~ 10019759 (+)
G1339109 LOC105023045 non-coding upstream 239499 9823061 ~ 9823600 (+)
G1339103 NA non-coding upstream 248593 9814280 ~ 9814506 (+)
G1339569 NA non-coding downstream 48160 10111659 ~ 10111893 (+)
G1339572 NA non-coding downstream 49620 10113119 ~ 10113545 (+)
G1339576 NA non-coding downstream 56028 10119527 ~ 10119742 (+)
G1339579 LOC106599233 non-coding downstream 57491 10120990 ~ 10121518 (+)
G1339581 NA non-coding downstream 58687 10122186 ~ 10122521 (+)
G1339525 NA other upstream 2969 10059878 ~ 10060130 (+)
G1339045 NA other upstream 360719 9701975 ~ 9702380 (+)
G1339018 NA other upstream 436699 9625939 ~ 9626400 (+)
G1338571 NA other upstream 879926 9178047 ~ 9183173 (+)
LOC110492817 LOC106578874 other upstream 968735 9091144 ~ 9108207 (+)
G1341172 NA other downstream 1718229 11781728 ~ 11782891 (+)
LOC110492879 NA other downstream 1894027 11952562 ~ 11958858 (+)
G1341689 NA other downstream 2160274 12223773 ~ 12229068 (+)
LOC110491388 LOC106578938 other downstream 2329455 12392917 ~ 12396813 (+)
LOC110491390 LOC106578939 other downstream 2338737 12402185 ~ 12403794 (+)

Expression


Co-expression Network