G1339579 (LOC106599233)


Basic Information

Item Value
gene id G1339579
gene name LOC106599233
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 10120990 ~ 10121518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1531650
ACGCTGCAGAGGTCTGATGCAACCTTGAAATGTTTGTTTGACAAGGCCTTAGCTGGGGACAGTCAATCTTCATGTGGGGGGATTTACACGGTAGACAATCACATACTCTACCTTGGGTCAGAGGCAGATAGCAGGAAGTTGGTGGTGCCATCTACCTGTAGACCACTTGTTCTCAACCTTGCACATACAGTTCCATGGGCAGGTCATCTAGGGCAACATAAGACCTATCTTAGGCTAGGCTCCCATTTCTTTTGGCCCTCCATATATACTGATGTACAAACCTACTGTAAATCATGCCCCACGTGCCAGAAAACCAGTGCTGTCTGTAGGTCTGACCGGGCTCCTTTATGTTCACTGCGAGTTATCTCTACCCCATTCAAGAAAATTGCAATGGACATTGTTGGACCATTGGAGAAGAGTAGTGCAGGTTACAAGTATATATTGGTGATTTGTGACTATGCCACCCAGTTCCCAGAAGCCTTCCCACTCCGTTCCATAACCACACCAAAAATAATCAGTGCTCTTGTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1531650 True 529 lncRNA 0.47 1 10120990 10121518

Neighbor

gene id symbol gene type direction distance location
LOC118939487 ogfod3 coding upstream 865114 9238981 ~ 9255876 (+)
LOC110491327 LOC106578881 coding upstream 883615 9234025 ~ 9237375 (+)
LOC110491323 NA coding upstream 949511 9163483 ~ 9171479 (+)
LOC110491321 mrpl38 coding upstream 977318 9084767 ~ 9143672 (+)
LOC110491320 LOC106578876 coding upstream 989597 9124217 ~ 9131393 (+)
galk1 galk1 coding downstream 105700 10227218 ~ 10237422 (+)
llgl2 LOC106578897 coding downstream 116036 10237554 ~ 10270791 (+)
myo15b LOC106578894 coding downstream 168335 10289853 ~ 10320827 (+)
LOC110491336 LOC106578893 coding downstream 208560 10330078 ~ 10373090 (+)
LOC110491338 LOC106589448 coding downstream 257305 10378823 ~ 10407995 (+)
G1339576 NA non-coding upstream 1248 10119527 ~ 10119742 (+)
G1339572 NA non-coding upstream 7445 10113119 ~ 10113545 (+)
G1339569 NA non-coding upstream 9097 10111659 ~ 10111893 (+)
G1339529 LOC106562530 non-coding upstream 57491 10063099 ~ 10063499 (+)
G1339499 NA non-coding upstream 81577 10039134 ~ 10039413 (+)
G1339581 NA non-coding downstream 668 10122186 ~ 10122521 (+)
G1339587 NA non-coding downstream 9987 10131505 ~ 10131769 (+)
G1339598 NA non-coding downstream 26345 10147863 ~ 10148071 (+)
G1339626 NA non-coding downstream 63564 10185082 ~ 10199225 (+)
G1339633 NA non-coding downstream 94369 10215887 ~ 10216264 (+)
G1339525 NA other upstream 60860 10059878 ~ 10060130 (+)
G1339045 NA other upstream 418610 9701975 ~ 9702380 (+)
G1339018 NA other upstream 494590 9625939 ~ 9626400 (+)
G1338571 NA other upstream 937817 9178047 ~ 9183173 (+)
LOC110492817 LOC106578874 other upstream 1026626 9091144 ~ 9108207 (+)
G1341172 NA other downstream 1660210 11781728 ~ 11782891 (+)
LOC110492879 NA other downstream 1836008 11952562 ~ 11958858 (+)
G1341689 NA other downstream 2102255 12223773 ~ 12229068 (+)
LOC110491388 LOC106578938 other downstream 2271436 12392917 ~ 12396813 (+)
LOC110491390 LOC106578939 other downstream 2280718 12402185 ~ 12403794 (+)

Expression


Co-expression Network