G1341172


Basic Information

Item Value
gene id G1341172
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 11781728 ~ 11782891 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1533369
ttgatgacagttttgcacactcttggcattctctcaacctgcttcatgaggaatgcttttccaacagtcttgaaggagttcccacatatgctgagtacttgttggctgcttttccctcACTCTGTCCAACTCATACCAATCCATCTCAGTTGGGTTAGgaccatcactcttcttcttggtcaaataacccttacacagaatggaggtgtgttttgggtcattgtcctgttgaaaaacaaatgatagtcccactaagctcaaaccagatgggatggtgaatgctgtggtagccatactggttaagtgtgcattgaattctaaataaataacagacagtgtcaccagcaaagcaccatcacaccacctcctcctccatgcttcatggtgggaaccacacatgcagagatcatccattcacttactctgcatctcacaaagacagcggttggaaccaaaaatcttacatttggattcatcagaccaaaggacagatttccaccagctaatgtacattgctcgtgtttcgtggctcaagcaagtctcttcttcttattggtgtcctttagtagtggtttctttgcagaaatttgaccgtgaaggcctgattcacgcagtctcctctgaacagttgaggttgggatgtgtctgttacttgaactctgtgaagcatttatttgggctgcaatctgaagtgcagttaactctaatgaacttatcctttgcagcagaggtaactctgggtcttcctttcctttggcggtcctcataagagccagtttcatcatggctcTGGATGGTTTTGGCTACTGCACTTGaggaaacgttcaaagttcttgaaatgttccagattgactgacctccatgtcttaaagtcatgatggactgacctccatgtcttaaagtcatgatggactgacctccatgtcttaaagtcatgatggactgacctccatgtcttaaagtcatgatggactgtcatttctctttgcttatatggacttggtcttggtcaaacgcattaagaaggaaagaaattccacaaaggcacacctgttaatttaaatgcattccaggtgactacctca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1533369 True 1085 TUCP 0.43 2 11781728 11782891

Neighbor

gene id symbol gene type direction distance location
prph2a LOC106578913 coding upstream 41329 11730859 ~ 11740399 (+)
LOC110491347 LOC106578912 coding upstream 52702 11727101 ~ 11729026 (+)
si:dkey-21c1.4 LOC106578910 coding upstream 64053 11713721 ~ 11717675 (+)
LOC110491343 gna13 coding upstream 74025 11669220 ~ 11707703 (+)
LOC110491340 LOC106578890 coding upstream 1208906 10569811 ~ 10572822 (+)
LOC110491349 LOC106578916 coding downstream 7275 11790166 ~ 11794147 (+)
LOC110492827 LOC106589430 coding downstream 71801 11854692 ~ 11886588 (+)
LOC110492879 NA coding downstream 169671 11952562 ~ 11958858 (+)
LOC100136067 gdh2 coding downstream 184398 11967289 ~ 11991296 (+)
LOC110492833 LOC106578928 coding downstream 460174 12243065 ~ 12271829 (+)
G1341210 NA non-coding upstream 43426 11737731 ~ 11738302 (+)
G1341192 NA non-coding upstream 103220 11677812 ~ 11678508 (+)
G1341184 LOC106578908 non-coding upstream 118647 11659702 ~ 11663081 (+)
G1341119 NA non-coding upstream 181538 11597208 ~ 11600190 (+)
G1341082 NA non-coding upstream 250541 11530976 ~ 11531187 (+)
G1341228 NA non-coding downstream 17003 11799894 ~ 11800397 (+)
G1341234 NA non-coding downstream 25717 11808608 ~ 11810509 (+)
G1341287 NA non-coding downstream 204034 11986925 ~ 11987540 (+)
G1341152 NA non-coding downstream 209326 11992217 ~ 11993860 (+)
G1339525 NA other upstream 1721598 10059878 ~ 10060130 (+)
G1339045 NA other upstream 2079348 9701975 ~ 9702380 (+)
G1339018 NA other upstream 2155328 9625939 ~ 9626400 (+)
G1338571 NA other upstream 2598555 9178047 ~ 9183173 (+)
LOC110492817 LOC106578874 other upstream 2687364 9091144 ~ 9108207 (+)
G1341689 NA other downstream 440882 12223773 ~ 12229068 (+)
LOC110491388 LOC106578938 other downstream 610063 12392917 ~ 12396813 (+)
LOC110491390 LOC106578939 other downstream 619345 12402185 ~ 12403794 (+)
G1341820 NA other downstream 684549 12467440 ~ 12469121 (+)

Expression


Co-expression Network