G1341689


Basic Information

Item Value
gene id G1341689
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 12223773 ~ 12229068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1533979
AGTTTCACATCTGTTTTTTATTTCTCTGAACTACAGAACACCAACTGAACAGCTCAGCTCTCACATCAATCAGACAAAACCTCCCTGCTATCtcctcccttcctttcccttcccttcccctccctttctTATCACAATAAGGAAGTGGAAAAGGCAAAGGAAAAACCACCAAACAAACACATCCTGATACAGAGTGTACTACTGTGCAATGCACTGACACATTTATATGAAGCAAGAAAGAAAAACACAGGCTATTTCATGatattcataataataatatactcACAATAATCATGACAAAAATAACATGAAAAAGAAGAGGTTGGCACTGCGTGCTGGTAGCTTCATAGATGAGTACAGTCTTGTTCTCCTATACAGTCAGCTCTTTGGTTCAGATTCAGGCCTTCATGTGACCAACTGGATTTTGAACCTGGGTCTCCTGCACTCCCCGAGATTGTATTAGGCCCCTTAGCTAAAGTCACAGTGGAAGCACACAGCAGGCATGTAGTCCATCCTTTTACAAGTCAGCATTAGCCTACAGTTTGTCTTAGGATGGATGTTCtggcttctctcctctcatccatctctcctctcatccatctctcctctcctcgatctctcctctcatccatctctcctctgctCGATCTCTCTTTAGCACGTCCTCACTTTTATCTGTTTATCCTTCTTTATTTTCAACTTTATTCTGTCATTCCCAACGCATTCAATTTTGTTTTATTAGACTACATATCAAGTCCCATTTTCTCTCCCTATCCAtgtttctcgctctctttgtctGACACTTTAGATCGCGTTataaaatacttattttacatTCATATATTCATACATATCAACTATATTCTACATCAACTATacatcaaataatattttttatcaGGCGAAGCAGAGGAGGTCAAATTATCAGAATAAGGAATGGTGATGACAAGGCTGGTGTGAACCAAGAGCTACAATGGTGTCCAAACAGGAAGTCTATAAAATAAAGAATGTGATCAAGAAAACCCCAGACCAAAGACACTTCAAAGTATTCAAACAGGTGAGTAGTGGATAGACTTCTGATTTTCATTCTTAGGTAAATTATGCAATGCACAATACTAACATCTCTTTTGGACTGACAAAGACCAATACCTTGTCAATCCAAAACGTGAGAGCAtagttgtcctatggttattttgcatacaacattcccacaacattctgggaatggtgcaggatagttgcttggctttggaacattccgAGCAGATTGaaggaacttgacaaaataacgttattttcttggtatttcgttactttaaataaatgttttccaaAAGTtgaaacatggttacatttaatgacacttttggtaatgttctaggaacgttctccaactgggAATGTtttcaaatagttcagagaatgtTTAGTAACAACGTTCTTCTGCAAGAATTTCAATATTTCAGAAtaatgtttcctacaggtttcctcatggttctatttaaagtactGTTCTCAGAACATTCAGAAAACGTTAAGAAACAATATTCTTCTGCGGGATGTttagtacttcagcataacgtcgtctgaaggtttcctcatggttctatttaaagtactGTTCTCAGAACATTCAGAAAACGTTAAGAAACAATATTCTTCTGCGGGATGTttagtacttcagcataacgtcgTCTGAAGGTTTGCTCATGGTTCTATtcaaagtcatgttctcagaacattaagaaaacgtttgctaaaaaccacaagaaaacataAATAACGTTTAAAAACGaatacattccgttctcagcgtcaactctctctctcctcaggtgtGTTAGCCGTGCCCGATAATTGGCCACACttgaataaatgtttgttttctttgaaatggggtctgtttgtgtaGACTACAATGAACATGAGTTTATTTTAAACAAGTAATAAAAAaacatgctagctccatcctggtggcgcagTAGACTCATTTcatagatagagaacagaagatcataggtttgaatctcactgacgccgtgccacaataaaaaaaaatgcatgtgtttgcatgattaatgcctcaGCAAATACATTTCCATTTGTcttatctgtgcttggagttcttAACAAACTATTCTCGCAGTGTTATtgaaagtcttattgaaacattcagtgaaaaTGTTAAGGAAGTTATTCCATCATTTCGAAATAACCTTTACATTTTGTTTAACACATTCACAACATTTAGATAATGTTCTCAAAACtttatttaattaccttcaaataacccATCATTTCTGTTCTAAGAACGATAACAAAACCTCCTAGGAAAACTTTCAGGGGAACCAGAATAAAATGTTCTCAAAACCTCCCTGCAAACTTAAAGCGTACCttcccagaacaggcaaaatgTTTACTTCCGTTATCAGAATGTTTAAAAAACATTCAGTTTTACCGGTCTGGGTAACTTACGGCttcattcccagaaccaatggtaaaccaaaaacgtacgttcccacaacttccaaggaaccaaatttGCAAGCTGGGATTTCTCCAGAGCCAGTCTATAGTGTGTTGACTTAGCTCATGGTGGATCCGGGGCGCCAGACGCTAGGTTGCAGACCCAGGTTAGAGGTGCTGAATTTGGGGCGAGGCACTCTGGAGGGCTGCGTGGAGGCGGGGCGAGGTGGGGTGTGGGCCAAATGGCTCAGATCAGGGGCACTCTTAAACTGACTGTTACCTTGTTGGGGGGCGTGGGCCTGggaggggtaggggttagggtcagggacaTGGACGGAGGAGAAGCTCGGAAGCTGTGGGAGGGGGCCTGTGGGGGCTGGAGTAGGTGGGACCCACTGGGGCTGAGGTTGGTAGGGGGGGGTAGAGAGTGATTGGTAGCAGGAAGTGGCTGTTGGGGGAAGAGAAATGACATCAGACCTCCACATCGGTTCTCCTAGTGTGGTCGCTGATCGTGGGATGATGACAGTAGGGGCGGGGCCTGTGGGAGGTGGCGTGGAGAACCGTTTGACCTCATACACACGTGGCATCTTGTTTTGGCCCTGGGGAGTCCCGCCCCCGTAGCTGAAGAGGGAGGAGTTTAGCTGATAGGGCTGGTGACTCATGAAGTCCAGAGCCTTGATGCCTTGAGCCTTCTGACCCCCAGGGGCGGCTTTATGCCCCGCTGAACCCCCACCCTGTCCTACTACCCCCGCCCTCTGGCGCTGGGCTTGGGGAGggcaggagggggagaggagggggttgtAGCTGATGGGAGGGGGGGCTCTGCAGCTGGAGGAGTATTTGAattgagaggggagggagggtgtgggaGAGGGCTGGCGGGGGTGGCCGGGACTGGGTTGGGGTGAGGAGGGGGTCTCCACCACATAGCGATCCATCCTGCTCTGCCTACGGGCAAACAGCTGACCCCCCTTCCCTGCTAGCTGGGGTACCTGTGGAGGAGGCTGGGGTTTAGGGGCCACAGGAGGGGGCTTGGAGCCTCTCTGTGCCTGCATGAAGTTACAGGCCTCAGCCCCCAGCTTCAACCAGTCCTCTTCAGGGCCTGACTCACCTCCAGCCTCCCCACTAACTCCTCCACTAGGCCCCATGGGGCCTGGGCCTATCCTGGTCGGTGCATCCGGGTTTTGGAGCAGCTCCAGCAGGGCCGGGTTGGGAGACACGTCCTTCTTGTTCTCCACAGAAGGACGGAACATAGGCTTCTTGTTGCTGCGACGACGCGCCTCCGCGAGAATGCCTGTTCTGGAGGCGGGGACGGCGATACGCTGCTCACGGGATGACAAAGAATCAGAGGCAGGGGTCTGGGCAGTGGAGGGGGTCACCATGGCAGGGTTTGTCATAGAGACATAGGAGTTGAAGGTCAAGGGAGGAGGGGGTTGGGTCTGAGCAAGGGAGGGAATGTAAGGTGTGgcagaggatggagagaagggttgattagaagaagaaggaggagagaagggctGGGCAGCCATGGCAGAGGATGGATAGACTGGggcatgaggaggaggaggggagaaaggtTGACTAGGAGTAGAGAAGTGTTGAAtgggggcaggaggaggagagaatggtTGAGGAGCAGTCAAGGAGCAGCAGTCAGAAGAAGGAGAGAAGGTGGCAGTATGGACCGAGGGAGAAGAGAAAGGCTGAGAGGGAGTGCGGgtaggagaggatggaggagagagaacaagaggaggaggagagaggatggattcAGTAGGTCTAGGGGGAATGTAGAGGGAGGTACTGGAGACCGCTCTCCTGGCCTCGGGCGCCCCTGAAGGTCGAGGGGGGGCGATGGTTACCATGGATACCGCAGCAGTGGGTTTGGAAACCATTGTCAAGCCAGGAGTGGGCTGGACGGGTCGGAAGATGACAGGGCTGGCGGGGGGGCGAGATGGGGCAAGGCCTGAGCTGAAGGGGCGTGCCGTGCGGTTATGGATTCCCCCAGgcgggttagggttagtgtttaggTCAGGCTGGGGGGGGATAGGGGTGTGAGAGGTGGAAGTCAGAACCACACTGGCCTGACTCATCCCTGCTGAGCCCCCATTGGACAAACTTGCAGTCAGGGAGGTGTTAGGGGCAGAGTTGTAGGTGACAGGAGTGGCCAATTTCCTTTGCTGCTCATACTGCTTTGTCTCTTTCCCCTGATAGGCTATGTAGTCCAGCCCGGGGCTCTGATAGGCTGGGGCATTCATCCCAGACCCCTGATTGAATGACATGTTCATCTCTGGGCTCTGATAGGCCAAGGAATCCAACCCTGAGCTCTGATTAGTTGGTGTTTGGGGCCTTGAGTTATAGGTGGAGGGGCAGGCAGAACTCCTCCTATCCAGCATGTCCAGGTATTCGCTGTCCCAGGTGGGGTCAAAGGTTCCAGCAAAGCCCTCTTCATCCACCTCTGAACCCGAGGGGAAGGaactcccttcctcctcctctccctccgtctctcccccagtctcatgacccacctccccctccatctctcccccagtctcagcACCCACCTCCCCCTCTGCGCGGCCAAAACAGGTGAGGGTGAACTTCTTGGCACGCTGGCGTCTCTTCTTGAACATGAGAACTCCTTTAGAGTTGGAGTTTGGAGCGTCGGTGAGCAGGGAGGCGATGGAACGACATTTAGTACGAGCCTCTTTCACCTGCCTG

Function

NR:

description
synaptopodin 2-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1533979 True 5187 TUCP 0.49 2 12223773 12229068

Neighbor

gene id symbol gene type direction distance location
LOC100136067 gdh2 coding upstream 232477 11967289 ~ 11991296 (+)
LOC110492879 NA coding upstream 264915 11952562 ~ 11958858 (+)
LOC110492827 LOC106589430 coding upstream 337185 11854692 ~ 11886588 (+)
LOC110491349 LOC106578916 coding upstream 429626 11790166 ~ 11794147 (+)
LOC110491348 LOC106578914 coding upstream 437412 11750790 ~ 11786361 (+)
LOC110492833 LOC106578928 coding downstream 13997 12243065 ~ 12271829 (+)
LOC110491387 LOC106578937 coding downstream 154679 12383747 ~ 12391454 (+)
LOC110491388 LOC106578938 coding downstream 163849 12392917 ~ 12396813 (+)
LOC110491390 LOC106578939 coding downstream 173117 12402185 ~ 12403794 (+)
LOC118939507 LOC106578942 coding downstream 222361 12449383 ~ 12519956 (+)
G1341665 NA non-coding upstream 61351 12162214 ~ 12162422 (+)
G1341664 NA non-coding upstream 63211 12159776 ~ 12160562 (+)
G1341662 NA non-coding upstream 64657 12149289 ~ 12159116 (+)
G1341642 NA non-coding upstream 89604 12133936 ~ 12134169 (+)
G1341640 NA non-coding upstream 90025 12133387 ~ 12133748 (+)
G1341740 NA non-coding downstream 12583 12241651 ~ 12241886 (+)
G1341746 LOC106578930 non-coding downstream 45616 12274684 ~ 12276178 (+)
G1341748 LOC106578930 non-coding downstream 48003 12277071 ~ 12279094 (+)
G1341752 LOC106578932 non-coding downstream 67863 12296931 ~ 12299490 (+)
G1341172 NA other upstream 440882 11781728 ~ 11782891 (+)
G1339525 NA other upstream 2163643 10059878 ~ 10060130 (+)
G1339045 NA other upstream 2521393 9701975 ~ 9702380 (+)
G1339018 NA other upstream 2597373 9625939 ~ 9626400 (+)
G1341820 NA other downstream 238372 12467440 ~ 12469121 (+)
G1342581 NA other downstream 1052373 13281441 ~ 13281819 (+)
G1342713 LOC106578962 other downstream 1362220 13591288 ~ 13636378 (+)

Expression


Co-expression Network