G1343283


Basic Information

Item Value
gene id G1343283
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 13261455 ~ 13262601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1535825
TGATTTCATAGTTATTGAGCTGTTTCATGGCAGTCTTGGCTTCATTTTTGTTGTAAAAGGTAACGAAGGCATATCCTCTATTATTGCCGTTGAAGTCCATCATCATCCGAACCTCAAAGATTTTCCCAAACTGTGAATTGAAAGGGGATGCGTTTGAAAACCAAGGACACACAATAGGTTACACTTTGGGAACTGATTTAACTGGCAAACCTATCTTACTTTCTCACAGTGGGGGACCAGCTCATCCTCAAAGAGGTCTCTTGGCAGCTTCCCCACAAAAATCTCACTGCCCCTCTCTGGGGGAGGGCCTTCCCAGCCTGGAGGGGGCCCGCCGTACCTCCTCTGACCATTCTCCTGTAGACACAACGGACTGATGGTGAGTAACCAGGGGTTTGTAAGGAGATCCACCTGAAATGTCCTTTGTAACGCAGGTTTCATTCCGAATGAGAGATTTGAGCATTCATATAGAAATCTCCCAGATATCCTTGTTATCTTTGATGACCTTGTAGTTATGCACAAATTGCCCAGACAATCCCCAtaacaatGCAATACGAGCTGTAGAATCTCCAACCAAATGAATTTGACATGGACCAGACTTCAGCAGTAAGACAGAGGGATCCAGTCACTTGTGTCTTTCACCAGAGGGTGGCGCCCCATTATCAATAATTGTAACGAAGGCCAAGGGAAAGAGCTCACTGGCACGTGAATAGCTTTGAAACTGATGGAGAGACCTCGAATTTTATCAGAGCACTTCACATTACACATAAACTCCATAAGGAAGGATGACTTGTGTGGAGGCCTTATGATAACACTCATAGATTTGGTCATAGATTAGGCGAAAGCCCTACCTGCTTTGGATATGGCTCCTACCTGCAGTAATTGGTATCCTGTGCGCTGAATGAGCGCACGCAGCGCGGCCTCTTTCTGCATGCCCGT

Function

NR:

description
APOBEC1 complementation factor-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1535825 True 936 lncRNA 0.46 2 13261455 13262601

Neighbor

gene id symbol gene type direction distance location
LOC110491369 LOC106589397 coding downstream 17974 13059005 ~ 13243481 (-)
LOC110491368 LOC106578949 coding downstream 204496 13055138 ~ 13056959 (-)
LOC110492836 LOC106578942 coding downstream 727983 12454370 ~ 12533472 (-)
LOC110511413 NA coding downstream 810822 12449334 ~ 12505933 (-)
LOC110491391 LOC106578936 coding downstream 823048 12422693 ~ 12438407 (-)
LOC110491374 LOC106578955 coding upstream 23020 13285621 ~ 13334372 (-)
LOC110491375 LOC106578956 coding upstream 82585 13345186 ~ 13356029 (-)
rnls rnls coding upstream 158545 13421146 ~ 13464395 (-)
ankrd22 ankrd22 coding upstream 219600 13482201 ~ 13491975 (-)
LOC110491380 acta2 coding upstream 246054 13508655 ~ 13516671 (-)
G1343282 NA non-coding downstream 1892 13258519 ~ 13259563 (-)
G1343074 LOC106578947 non-coding downstream 322472 12938488 ~ 12938983 (-)
G1343058 NA non-coding downstream 357041 12903428 ~ 12904414 (-)
G1343038 NA non-coding downstream 378530 12860992 ~ 12882925 (-)
G1342159 NA non-coding downstream 611299 12649788 ~ 12650156 (-)
G1343285 NA non-coding upstream 15797 13278398 ~ 13278702 (-)
G1343288 NA non-coding upstream 18003 13280604 ~ 13280981 (-)
G1343289 NA non-coding upstream 18564 13281165 ~ 13281366 (-)
G1343095 NA non-coding upstream 21762 13284363 ~ 13284691 (-)
G1343091 NA non-coding upstream 63253 13325854 ~ 13326937 (-)
G1343278 NA other downstream 9787 13251434 ~ 13251668 (-)
G1342941 NA other downstream 561287 12698986 ~ 12700168 (-)
G1341480 LOC106578921 other downstream 1241941 11946567 ~ 12097768 (-)
LOC110491342 LOC106578908 other downstream 1604892 11652429 ~ 11667766 (-)
G1340519 NA other downstream 2236253 11024102 ~ 11025202 (-)
G1343452 LOC106578962 other upstream 322535 13585136 ~ 13634178 (-)
G1345259 NA other upstream 1988776 15251377 ~ 15253570 (-)
G1345561 NA other upstream 2436384 15698985 ~ 15699263 (-)
G1347067 NA other upstream 3661921 16924522 ~ 16929432 (-)
G1347343 NA other upstream 3932729 17195330 ~ 17196129 (-)

Expression


Co-expression Network