G1343452 (LOC106578962)


Basic Information

Item Value
gene id G1343452
gene name LOC106578962
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 13585136 ~ 13634178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1536006
TCAAGTTTATGGCAGTATGTTTTATTATCTCTTTCACAATGTTAATGCCAGTTACAAGAGCAACAACAGTTGAACGGTCGGTGAAGATATCTAATCAACTACCTGAAAGGTGACACATCCAAAgacataaaaacatgttttcctaaAGTAATACattctaattaaaaaaaatacatgttggaATTTTACACAAAAAAATCGAACATAAGAAAAATGCACGCAACTTGAAGTTACTGTTACACTTTATGATTAAAACCATTTAAAATGCATGTAGCAGTACTCCAATAAGCCATGTGTTGTGTAACAATATGTGTATTTCTCAGCACCAGTATATCTTACAAGACTCTTTTCGATGTTAGGAGAAAGACCAAGGTCAAGGGTTGAAATGGGGACCTGTTTTTATCCTCTTATCTTATCCCAACATGGAGTTAAAAGCCATCAAACACACTCTGTCCACTTGTGACAACCAGTCCCATTGCGGGTTTGGATGTCacacagtatggggttggttgtcacaataTTTGCTAGTAGCTTATTCCTTTACTTGAtcaaacaatatttctaacaaaaTTCAGCATTTTATGCCGTGAGGATAACACGTGACATTTTcagtgaatttgtgtgtgtgtgtgcttgcacatgcgtgtgtgggtgtgtgacagAAAACATGTGTGTTTGAGAGAAAAGCAACGAAGGGAGCTCTTTATATCACAAGAACAAAATAGCTTGCAATTTATTGTATACCGGGGGTGGCAATGTTGAAAGTGACAACCAACCCCGTATTCCATGTGACAACCATCCCCAACTACACCACCCCCCAATGCTAATTAAGATGTTAGTTACCACATGACTTGACCTAGGAATTTAAAtatctctccctttccttttTTCAACAAACATCCTTGTTCATGGATACTCTGATAATTCAAACATTTACAAAGAAAATGTcatacttttaaaaaaaacttttacctATGAAAAACACAAATTCATCTCACCACAATGTTTTGTCATGTTGACATAAATTGACCAGGTGGATGAGTTCTTTCAAATTCATACATTTTAACCTTCCAATTATTACACAGCGCCATTTCAATTGGGAGTAATTAGCACTGTGACAACCATCACCGGTCTCCCCTATATCATATCAGTTTCATTCCTTTGCCTAGGGCATCTGTAAGGTCATCTGTGTCTGAAGAGTGCACCTCGACTCTCCTTGGCTCTTCAGCATTCCTGCCTTTTTTGTCTTCAATTGCGAGGAATTCCAAAATCTCAGAGGCATCACCAACTGTCTTCTTTTTAGTCTGACACCACTCTGCTATCTGCATCAGTATCTTCCTAGCCTTATTTCTGTGCCAACTCTCAATCGGAATCTGGTAGGCCTTTTTGAACTGGGTCACAGCACCATACACGTCTTTCTTCTTGTAGTACAGAAACCGTCCGAAACAGGAGTGGCATTGCTGCTTGTCTGAGTCACTAAGGgactcatctttcagcaggatgGTGAAGATCTTCATCGCCTCCTCCAGCTGGTAGTTGTCTCCGTAAGCCTCAGCCAGGTTCAACCTGAATTGGACGTTGGATGGCTTCAGTTCCACAGCTCTGGAGAAGTGATGGATGCAGAGCTCCATCTTCTCTCTTATCTGGCGTGCGTTGACCCATCTCCCTTCCCTCTTCTGCTCAGACATCTGGTGGAACTGCTGTTTGTGACACAGGCCGATTTGGTAATGCATGAAGGGGGAGTTTACAGACAGTTTGACAGCTTCCTCCAAAACCTCCAGGGTCTCATTGATGTCCGCATGCCTGCAATACTGGGCCAAGTAATATGTGACGTGAGGCACGTCAGGAGACAGTCTGAGGGCCTCTTTGATGAGTTTCATGGACTCATGTCGACTTTGGTTTTGAAGCTGCACAGCTAGTAGGACCATGATTTCAGTGTTATCGGGCTCTAAGGATAAGGCTTTCCTTAGCTGAGTAGCACCTTCAGTATGCGCCAATCTCTCTGTTCCATCCATGGCTAATCCCTCCAACCTGTACAGGACCATGGCATAGCCCACGTTGAAGGATGCATTGTCTGGTTCTTCCTTAAGAGCTTTCTGAAAGCTCTCCTTTGCCCCCAAATAAAATAGCCCCCCAAGCCTTAGAAAACTCCAAGCCTTCTCACCATGTATTGAAGGTAAGCTGCCTTGAATAGCAGTCGTAACACCCTTATTGATGTTTTCCAGCTTTCCAATGTAGGCATCCACATCATTCATGTTCCCTGAGTGATAGTGAACCCATGCAAAGTTAGCATAGGTTACCAGTAACTCTGTATCATCCTGTCTATTCTTCAATGCACTCTCAGCCTTGTGGAGATACTCAAGAGCACTAACATTGTTTTCCTCCAGGTGGCTCAGAAAGGCTAGTAAGTTGAAATATGTGGCATGGTTCAGAGTGCTGAACTTCATGATGCGATCCAGAAGTTTTTCAGGGAGGCTGTCCCGGTCCTTGATGTCATCCTTTTCTATTCCCCATGTAAAGTGACACTCAAGTGCTTTCAGCTTCACTTCCATATCTGTTGTGACAGAAGCGCTATGAGAAAAAAGAAAAATACCCATTAGTATttgttattataatattattattagccCATCATTGTTGTCGTTGTTATCagccatcatcatcctcatcatcatcacaacagcatggacagtaccagtcaaaggtttggacaca
>TU1536004
cCGCTCAGCCCAATGTTTTGTCATTCTGAAATGGATTGTTATTTCAAATAATTCACAAACATAACCTTCCAATTATTACACAGCGCCATTTCAATTGGGAGTAATTAGCACTGTGACAACCATCACCGGTCTCCCCTATATCATTTCAGTTTCATTCCTTTGCCTAGGGCATCTGTAAGGTCATCTGTGTCTGAAGAGTGCACCTCGACTCTCCTTGGCTCTTCAGCATTCCTGCCTTTTTTGTCTTCAATTGCGAGGAATTCCAAAATCTCAGAGGCATCACCAACTGTCTTCTTTTTAGTCTGACACCACTCTGCTATCTGCATCAGTATCTTCCTAGCCTTATTTCTGTGCCAACTCTCAATCGGAATCTGGTAGGCCTTTTTGAACTGGGTCACAGCACCATACACGTCTTTCTTCTTGTAGTACAGAAACCGTCCGAAACAGGAGTGGCATTGCTGCTTGTCTGAGTCACTAAGGgactcatctttcagcaggatgGTGAAGATCTTCATCGCCTCCTCCAGCTGGTAGTTGTCTCCGTAAGCCTCAGCCAGGTTCAACCTGAATTGGACGTTGGATGGCTTCAGTTCCACAGCTCTGGAGAAGTGATGGATGCAGAGCTCCATCTTCTCTCTTATCTGGCGTGCGTTGACCCATCTCCCTTCCCTCTTCTGCTCAGACATCTGGTGGAACTGCTGTTTGTGACACAGGCCGATTTGGTAATGCATGAAGGGGGAGTTTACAGACAGTTTGACAGCTTCCTCCAAAACCTCCAGGGTCTCATTGATGTCCGCATGCCTGCAATACTGGGCCAAGTAATATGTGACGTGAGGCACGTCAGGAGACAGTCTGAGGGCCTCTTTGATGAGTTTCATGGACTCATGTCGACTTTGGTTTTGAAGCTGCACAGCTAGTAGGACCATGATTTCAGTGTTATCGGGCTCTAAGGATAAGGCTTTCCTTAGCTGAGTAGCACCTTCAGTATGCGCCAATCTCTCTGTTCCATCCATGGCTAATCCCTCCAACCTGTACAGGACCATGGCATAGCCCACGTTGAAGGATGCATTGTCTGGTTCTTCCTTAAGAGCTTTCTGAAAGCTCTCCTTTGCCCCCAAATAAAATAGCCCCCCAAGCCTTAGAAAACTCCAAGCCTTCTCACCATGTATTGAAGGTAAGCTGCCTTGAATAGCAGTCGTAACACCCTTATTGATGTTTTCCAGCTTTCCAATGTAGGCATCCACATCATTCATGTTCCCTGAGTGATAGTGAACCCATGCAAAGTTAGCATAGGTTACCAGTAACTCTGTATCATCCTGTCTATTCTTCAATGCACTCTCAGCCTTGTGGAGATACTCAAGAGCACTAACATTGTTTTCCTCCAGGTGGCTCAGAAAGGCTAGTAAGTTGAAATATATGGCATGGTTCAGAGTGCTGAACTTCATGATGCGATCCAGAAGTTTTTCAGGGAGGCTGTCCCGGTCCTTGATGTCATCCTTTTCTATTCCCCATGTAAAGTGACACTCAAGTGCTTTCAGCTTCACTTCCATATCTGTTGTGACAGAAGCGCTATGAGAAAAAAGAAAAATACCCATTAGTATttgttattataatattattattagccCATCATTGTTGTCGTTGTTATCagccatcatcatcctcatcatcatcacaacagcatggacagtaccagtcaaaggtttggacacacatactcattcaagagt

Function

NR:

description
interferon-induced protein with tetratricopeptide repeats 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1536006 False 2715 TUCP 0.42 3 13585136 13620740
TU1536004 True 1730 TUCP 0.45 2 13618009 13634178

Neighbor

gene id symbol gene type direction distance location
ch25h LOC106579045 coding downstream 38625 13545178 ~ 13546511 (-)
LOC110491380 acta2 coding downstream 68465 13508655 ~ 13516671 (-)
ankrd22 ankrd22 coding downstream 93161 13482201 ~ 13491975 (-)
rnls rnls coding downstream 120741 13421146 ~ 13464395 (-)
LOC110491375 LOC106578956 coding downstream 229107 13345186 ~ 13356029 (-)
LOC110491395 LOC106578965 coding upstream 25203 13659381 ~ 13667159 (-)
LOC110491396 LOC106578966 coding upstream 52681 13686859 ~ 13698803 (-)
LOC110491398 LOC106578967 coding upstream 107015 13741193 ~ 13753444 (-)
LOC110492837 LOC106578968 coding upstream 123943 13758121 ~ 13764921 (-)
LOC110491403 LOC106578980 coding upstream 297844 13932022 ~ 13936223 (-)
G1343078 NA non-coding downstream 165541 13418177 ~ 13419595 (-)
G1343339 NA non-coding downstream 168488 13416425 ~ 13416648 (-)
G1343332 NA non-coding downstream 184012 13400856 ~ 13401124 (-)
G1343331 NA non-coding downstream 184811 13400031 ~ 13400325 (-)
G1343330 NA non-coding downstream 186296 13398604 ~ 13398840 (-)
G1343085 NA non-coding upstream 102806 13736984 ~ 13739703 (-)
G1343549 NA non-coding upstream 166526 13800704 ~ 13802846 (-)
G1343574 NA non-coding upstream 200676 13834854 ~ 13848085 (-)
G1343637 NA non-coding upstream 319147 13953325 ~ 13953548 (-)
G1343639 NA non-coding upstream 321538 13955716 ~ 13955937 (-)
G1343278 NA other downstream 333468 13251434 ~ 13251668 (-)
G1342941 NA other downstream 884968 12698986 ~ 12700168 (-)
G1341480 LOC106578921 other downstream 1565622 11946567 ~ 12097768 (-)
LOC110491342 LOC106578908 other downstream 1928573 11652429 ~ 11667766 (-)
G1340519 NA other downstream 2559934 11024102 ~ 11025202 (-)
G1345259 NA other upstream 1617199 15251377 ~ 15253570 (-)
G1345561 NA other upstream 2064807 15698985 ~ 15699263 (-)
G1347067 NA other upstream 3290344 16924522 ~ 16929432 (-)
G1347343 NA other upstream 3561152 17195330 ~ 17196129 (-)
LOC110491477 psme3 other upstream 3755207 17389099 ~ 17394265 (-)

Expression


Co-expression Network