Gene
RNA
| Item | Value |
|---|---|
| gene id | G1345242 |
| gene name | LOC106578991 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 15131961 ~ 15133041 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| serine protease HTRA1 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1537972 | True | 658 | lncRNA | 0.49 | 2 | 15131961 | 15133041 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110491419 | LOC106578987 | coding | downstream | 90377 | 14995420 ~ 15041584 (-) |
| grid1b | LOC106578986 | coding | downstream | 223991 | 14517319 ~ 14907970 (-) |
| LOC118939470 | NA | coding | downstream | 676244 | 14447197 ~ 14455717 (-) |
| dnajc9 | dnajc9 | coding | downstream | 914686 | 14213613 ~ 14217275 (-) |
| LOC110491408 | LOC106578977 | coding | downstream | 953791 | 14168129 ~ 14178170 (-) |
| c16h10orf88 | cssa19h10orf88 | coding | upstream | 39087 | 15172128 ~ 15176318 (-) |
| LOC100136179 | LOC100500786 | coding | upstream | 58785 | 15191826 ~ 15196912 (-) |
| LOC110491429 | NA | coding | upstream | 68374 | 15201415 ~ 15215187 (-) |
| LOC110491427 | NA | coding | upstream | 72504 | 15205545 ~ 15212257 (-) |
| vps35l | NA | coding | upstream | 122358 | 15255399 ~ 15258527 (-) |
| G1345230 | NA | non-coding | downstream | 32588 | 15097764 ~ 15099373 (-) |
| G1345213 | NA | non-coding | downstream | 54661 | 15077069 ~ 15077300 (-) |
| G1344958 | NA | non-coding | downstream | 77926 | 15053718 ~ 15054035 (-) |
| G1344948 | NA | non-coding | downstream | 89283 | 15042132 ~ 15042678 (-) |
| G1344933 | NA | non-coding | downstream | 156561 | 14975178 ~ 14975400 (-) |
| G1345241 | NA | non-coding | upstream | 32489 | 15165530 ~ 15166160 (-) |
| G1345223 | NA | non-coding | upstream | 76804 | 15209845 ~ 15224546 (-) |
| G1345284 | NA | non-coding | upstream | 92236 | 15225277 ~ 15225503 (-) |
| G1345285 | NA | non-coding | upstream | 100035 | 15233076 ~ 15233811 (-) |
| G1345287 | NA | non-coding | upstream | 101244 | 15234285 ~ 15236122 (-) |
| G1343452 | LOC106578962 | other | downstream | 1497783 | 13585136 ~ 13634178 (-) |
| G1343278 | NA | other | downstream | 1880293 | 13251434 ~ 13251668 (-) |
| G1342941 | NA | other | downstream | 2431793 | 12698986 ~ 12700168 (-) |
| G1341480 | LOC106578921 | other | downstream | 3112447 | 11946567 ~ 12097768 (-) |
| LOC110491342 | LOC106578908 | other | downstream | 3475398 | 11652429 ~ 11667766 (-) |
| G1345259 | NA | other | upstream | 118336 | 15251377 ~ 15253570 (-) |
| G1345561 | NA | other | upstream | 565944 | 15698985 ~ 15699263 (-) |
| G1347067 | NA | other | upstream | 1791481 | 16924522 ~ 16929432 (-) |
| G1347343 | NA | other | upstream | 2062289 | 17195330 ~ 17196129 (-) |
| LOC110491477 | psme3 | other | upstream | 2256344 | 17389099 ~ 17394265 (-) |
