G1345401 (LOC106579004)


Basic Information

Item Value
gene id G1345401
gene name LOC106579004
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 15476244 ~ 15477960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1538158
TTTAGATTAGACAGATAGGGAGGGGTAGGATGCACCATAAACACATCTCACTTTAGACAGGCATTTTTtttaggacagacagacagacagacaaagggcAAAACCTGCATAAAACTCAAATATTAAGATTGAATGTCCCACAAGAACATCTTGAGATGTAGATTCTTAGTAGAATAATGTGCAATTGTAATGTAACATAGTGGAAAATTTAAACATGCTCAAAGTGTATGAATCAAAGATTGGGTAAGGAAAATggcttctctcgctctctactgTACCTTTCCACTCCTCCACCGTGTGCTCCCTCTCATCCAGCTGCTTGTCTGTGATCAGTGGTGGGGGCGCCTCCACTTCAGTTGGATCATACCACACGTTGATGTAGGGGTGCTGGAGAGCCTCGCTCACAGAGATCCGTTTGGATGCATCTATTACCAGCATCTTCGATAATAGGTCTCTGGCTTGACTTGctttcagtttgttgtgctccgaGTCGGCTGGGAAGAGGACGTCGGGGAAGAGCTTCTCAAAGGTATAGCCGGCATAGCGGGGTCTGTTTTCCACGTAAGTCCTCACTGACTGGTTGAGCTTCATCAGGAACTCCTGACTTGGAGTCCCCAGCTGCTCGATCACCTTGTTCCACTGATCAATATCTGACGTTCCAACATGTAAGAAAAATGCTGCAAAGGGCTTTTCAGAGGCGGAATATTGGTTTTGTGCTTGTAGTTGGGATAAAG

Function

NR:

description
mitogen-activated protein kinase 8-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1538158 True 734 lncRNA 0.45 3 15476244 15477960

Neighbor

gene id symbol gene type direction distance location
LOC110492840 LOC106579002 coding downstream 19823 15435835 ~ 15462173 (-)
LOC110491438 LOC106579000 coding downstream 96767 15373276 ~ 15379477 (-)
LOC110491436 LOC106579001 coding downstream 103789 15368988 ~ 15372455 (-)
LOC110491435 LOC106578999 coding downstream 109714 15358308 ~ 15366530 (-)
LOC110491434 LOC106578998 coding downstream 125400 15322126 ~ 15350844 (-)
LOC110491439 LOC106579003 coding upstream 6419 15484379 ~ 15519287 (-)
LOC110491441 LOC106579048 coding upstream 45291 15523251 ~ 15525411 (-)
LOC110491442 LOC106579006 coding upstream 58048 15536008 ~ 15550905 (-)
LOC110491444 LOC106579050 coding upstream 118554 15596514 ~ 15599354 (-)
LOC110491446 LOC106579012 coding upstream 566284 16044244 ~ 16180566 (-)
G1345399 NA non-coding downstream 3372 15471860 ~ 15472872 (-)
G1345384 NA non-coding downstream 41804 15434241 ~ 15434440 (-)
G1345363 NA non-coding downstream 64970 15410929 ~ 15411274 (-)
G1345360 NA non-coding downstream 67657 15408367 ~ 15408587 (-)
G1345371 NA non-coding upstream 4015 15481975 ~ 15482652 (-)
G1345374 NA non-coding upstream 5282 15483242 ~ 15483469 (-)
G1345412 NA non-coding upstream 41847 15519807 ~ 15520055 (-)
G1345475 NA non-coding upstream 82169 15560129 ~ 15566321 (-)
G1345259 NA other downstream 222674 15251377 ~ 15253570 (-)
G1343452 LOC106578962 other downstream 1842066 13585136 ~ 13634178 (-)
G1343278 NA other downstream 2224576 13251434 ~ 13251668 (-)
G1342941 NA other downstream 2776076 12698986 ~ 12700168 (-)
G1341480 LOC106578921 other downstream 3456730 11946567 ~ 12097768 (-)
G1345561 NA other upstream 221025 15698985 ~ 15699263 (-)
G1347067 NA other upstream 1446562 16924522 ~ 16929432 (-)
G1347343 NA other upstream 1717370 17195330 ~ 17196129 (-)
LOC110491477 psme3 other upstream 1911425 17389099 ~ 17394265 (-)
prr15lb atd4b other upstream 2939655 18417572 ~ 18423242 (-)

Expression


Co-expression Network