G1346971


Basic Information

Item Value
gene id G1346971
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 16693984 ~ 16695101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1539885
gctttgcacactcttggcattctctcaaccagcttcatgaggtagtcacctggaattcatttcaattaacaggtgagacttgttaatttgtggaatttctttccttcttaatgcgcttgagccaatcagttgtgttgtgacatggtaggtgtgtgtatacagaagatagccctatataAAAggccaaatccatattatggcaagaacagctcaaataagcaatgcgaaattacagtccatcattactttaagacatgaaggtcagtcaatctggaaaatgtcaataaCTTTGAACGTTCTTGACAGTGTAGTTGCAAAAAccttcaagtgctatgatgaaactggctctcatgaggaccaccacaggaaaggaaaacccagagttacctctgctgcagagaataagttcattagagttaacagcacctcagattgcagcccaaataaatgcctcacagagttcaagtaacagacatctcaacatcaactgttcagaggagtctgtgtgaatcaggccttcatggtcgaagttgcttcaaagaaaccattactaaaggacaccaataagaaaagtagatttgcttgggccaagaaacatgagcaatgaacattagaccggtcgaaatctgtcctttggtgtgatgagtccaaatttgagatttttggttccaaccactgtgtctttgtgagacgcagaataggtgaacggatgatctccatgtgtggttcccaccgtgaagcatggaggtgtgatggtgtgggggtgctttgctgttgacactgtcagtgatttatttagaattcaaggcacacttacacagcattcttcagcgatacgccatcccatctggtttgtgcttaatgggactatcatttgtttttcaacaggacaatgacccaaaacacacctccaggctgtgtaagggctattttaccaataaggagtgattgagtgctgatcagatgacctggcctccacaatcacccgacctcaacccaattgagattgtttgtgaTGAATaggaccgcaaagtgaaggaaaagcagccaacaagtgctaagtatatgtgggaactccttcaagactgttggaaaagcattccaggtgaagctggttg

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1539885 True 1118 lncRNA 0.43 1 16693984 16695101

Neighbor

gene id symbol gene type direction distance location
lmf1 lmf1 coding downstream 12420 16653966 ~ 16681564 (-)
LOC110491454 LOC106579017 coding downstream 58432 16499126 ~ 16635552 (-)
LOC118939491 NA coding downstream 196643 16495588 ~ 16497341 (-)
LOC118939490 NA coding downstream 218652 16461836 ~ 16475332 (-)
pemt pemt coding downstream 258280 16354364 ~ 16435704 (-)
LOC110491459 LOC106579021 coding upstream 113 16695214 ~ 16724979 (-)
LOC110491457 LOC103024569 coding upstream 33402 16728503 ~ 16733104 (-)
LOC110491465 LOC106579029 coding upstream 463213 17158314 ~ 17212112 (-)
LOC110491470 LOC106579340 coding upstream 610957 17306058 ~ 17352385 (-)
LOC110491471 LOC106579339 coding upstream 661294 17356395 ~ 17359630 (-)
G1346904 NA non-coding downstream 113498 16579183 ~ 16580486 (-)
G1346897 NA non-coding downstream 134505 16557797 ~ 16559479 (-)
G1346487 NA non-coding downstream 221606 16472130 ~ 16472378 (-)
G1346479 NA non-coding downstream 229900 16463812 ~ 16464084 (-)
G1346475 NA non-coding downstream 235080 16458648 ~ 16458904 (-)
G1347109 NA non-coding upstream 193401 16888502 ~ 16895370 (-)
G1347067 NA non-coding upstream 229421 16924522 ~ 16929432 (-)
G1347148 NA non-coding upstream 253925 16949026 ~ 16949346 (-)
G1347183 NA non-coding upstream 294871 16989972 ~ 17046500 (-)
G1347244 NA non-coding upstream 370649 17065750 ~ 17066887 (-)
G1345561 NA other downstream 994721 15698985 ~ 15699263 (-)
G1345259 NA other downstream 1440414 15251377 ~ 15253570 (-)
G1343452 LOC106578962 other downstream 3059806 13585136 ~ 13634178 (-)
G1343278 NA other downstream 3442316 13251434 ~ 13251668 (-)
G1342941 NA other downstream 3993816 12698986 ~ 12700168 (-)
G1347343 NA other upstream 500229 17195330 ~ 17196129 (-)
LOC110491477 psme3 other upstream 694284 17389099 ~ 17394265 (-)
prr15lb atd4b other upstream 1722514 18417572 ~ 18423242 (-)
G1349366 NA other upstream 1938930 18634031 ~ 18634405 (-)

Expression


Co-expression Network