G1347109


Basic Information

Item Value
gene id G1347109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 16888502 ~ 16895370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1540043
ATATCAGTGTTTTCCCAATATTAAGGGAAACTCCACGCCGCTAAATTCTTGCCACTGctgaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacactaccgcacaaaaggaaacatatatacacactactgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgcacaaaaggaaaaatatatacacactaccgttcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacactaccgcacaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacatactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacatactaccgctcaaaaggaaacatacagtgccttgcgaaagtattcggcccccttgaac
>TU1540053
ATATCAGTGTTTTCCCAATATTAAGGGAAACTCCACGCCGCTAAATTCTTGCCACTGctgaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacactaccgcacaaaaggaaacatatatacacactactgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacatactaccgctcaaaaggaaacatacagtgccttgcgaaagtattcggcccccttgaac
>TU1540054
ATATCAGTGTTTTCCCAATATTAAGGGAAACTCCACGCCGCTAAATTCTTGCCACTGctgaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacactaccgcacaaaaggaaacatatatacacactactgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactactgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaaaatatatacacactaccgcacaaaaggaaaaatatatacacactaccgttcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatacacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaatatatacacactaccgctcaaaaggaaacatatatacatactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacatactaccgctcaaaaggaaacatacagtgccttgcgaaagtattcggcccccttgaac
>TU1540055
ATATCAGTGTTTTCCCAATATTAAGGGAAACTCCACGCCGCTAAATTCTTGCCACTGctgaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacatactaccgctcaaaaggaaacatacagtgccttgcgaaagtattcggcccccttgaac
>TU1540057
ATATCAGTGTTTTCCCAATATTAAGGGAAACTCCACGCCGCTAAATTCTTGCCACTGctgaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaaaatatatacacactaccgttcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacactaccgcacaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacatactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacatactaccgctcaaaaggaaacatacagtgccttgcgaaagtattcggcccccttgaac
>TU1540058
ATATCAGTGTTTTCCCAATATTAAGGGAAACTCCACGCCGCTAAATTCTTGCCACTGctgaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacactaccgcacaaaaggaaacatatatacacactactgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaaaatatatacacactaccgttcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaaaatatatacacactactgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaaaatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgcacaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgttcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacactaccgcacaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaacatatatacacactaccgttcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacatactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaacatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaaaatatatacacactaccgctcaaaaggaaacatatatacacactaccgcacaaaaggaaacatatatacatactaccgctcaaaaggaaacatacagtgccttgcgaaagtattcggcccccttgaac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106566260

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1540043 False 2945 lncRNA 0.35 5 16888502 16895370
TU1540053 False 1870 lncRNA 0.36 3 16888502 16895370
TU1540054 False 2618 lncRNA 0.35 4 16888502 16895370
TU1540055 False 642 lncRNA 0.37 3 16888502 16895370
TU1540057 False 1565 lncRNA 0.36 7 16888502 16895370
TU1540058 True 3725 lncRNA 0.35 4 16888502 16895370

Neighbor

gene id symbol gene type direction distance location
LOC110491457 LOC103024569 coding downstream 155398 16728503 ~ 16733104 (-)
LOC110491459 LOC106579021 coding downstream 163523 16695214 ~ 16724979 (-)
lmf1 lmf1 coding downstream 206938 16653966 ~ 16681564 (-)
LOC110491454 LOC106579017 coding downstream 252950 16499126 ~ 16635552 (-)
LOC118939491 NA coding downstream 391161 16495588 ~ 16497341 (-)
LOC110491465 LOC106579029 coding upstream 262944 17158314 ~ 17212112 (-)
LOC110491470 LOC106579340 coding upstream 410688 17306058 ~ 17352385 (-)
LOC110491471 LOC106579339 coding upstream 461025 17356395 ~ 17359630 (-)
LOC110491474 LOC106579337 coding upstream 481087 17376457 ~ 17380710 (-)
LOC110491477 psme3 coding upstream 494005 17389099 ~ 17394265 (-)
G1346971 NA non-coding downstream 193401 16693984 ~ 16695101 (-)
G1346904 NA non-coding downstream 308016 16579183 ~ 16580486 (-)
G1346897 NA non-coding downstream 329023 16557797 ~ 16559479 (-)
G1346487 NA non-coding downstream 416124 16472130 ~ 16472378 (-)
G1346479 NA non-coding downstream 424418 16463812 ~ 16464084 (-)
G1347067 NA non-coding upstream 29152 16924522 ~ 16929432 (-)
G1347148 NA non-coding upstream 53656 16949026 ~ 16949346 (-)
G1347183 NA non-coding upstream 94602 16989972 ~ 17046500 (-)
G1347244 NA non-coding upstream 170380 17065750 ~ 17066887 (-)
G1347269 NA non-coding upstream 204128 17099498 ~ 17100720 (-)
G1345561 NA other downstream 1189239 15698985 ~ 15699263 (-)
G1345259 NA other downstream 1634932 15251377 ~ 15253570 (-)
G1343452 LOC106578962 other downstream 3254324 13585136 ~ 13634178 (-)
G1343278 NA other downstream 3636834 13251434 ~ 13251668 (-)
G1342941 NA other downstream 4188334 12698986 ~ 12700168 (-)
G1347343 NA other upstream 299960 17195330 ~ 17196129 (-)
prr15lb atd4b other upstream 1522245 18417572 ~ 18423242 (-)
G1349366 NA other upstream 1738661 18634031 ~ 18634405 (-)

Expression


Co-expression Network