G1347609 (LOC106579335)


Basic Information

Item Value
gene id G1347609
gene name LOC106579335
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17405545 ~ 17407873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1540622
GCattatatatatatgcatgcattcggaaagtattcagaccccttgactttttccacattttttgcaaacatttctaaaaacatgttttttagctttgtaacgtaacaaaatgtgaaaaaatgtaaggggtctgaatagtttccgaatgcactgtatgtcctaGCCAAGAGTAGTTAATGTACCATAATGTACACAGATAATACTATATTTCCATCCTAATTTAGAAGTAGTGATGGTAATGATATTGAACATTTAAGTGATAATAAACATCATGCTTACTTCAGGCCTGGGTCCTCAATTTTTATGGGTATGACAACAGTATACAATTTCTCTGAACGTGATTTGACCGAGGTCATATTAGATATCTTGATTCTGCCCATCACCGTTTCATCGATCAGGACTTGCATATCAAAGTCCAAGACTTCCATCTCCGCAAAATTGTCATTGGTGAAGTTGAAAACATTGGTGACTTGCATTTCAACTTTGTCTGGGGTGAAGAAGACCAGTACTGATTGGACGGTGACAGGGGATAGTGAGATACTCCgtgggaagaggaagaagaggatcaGAAAGCAGATCAGGAGACACAGCACCACCGAGATACACACGTAGAGTTTCgtgCGGCTGGGCCTCAGTCTTTTGTCTGAACATGAGATGACTGCCACTAGCTGATCATGTTTTCTTGGAATACGCCCTATTCCCCGACAAGTCGGGCAGTTATCTCCTACATTGCCTATGCTGTCCCCGATGGCTCCGTATAGTTGGGAGTGGGACCGAAATCTTCTCTTCTCTGGATCTTGTTCCTGAGGCACGATGGCCTCTGTGCCCTCCTTGGAGGCACTGGGGTGTCCGACAGTGACCATGGTCTGAAACACCGTCCTATCTGCTGGGAGAAAAGGAAACACAACCCCGTCTGCTGTTAAAAAGGGGGCATCAGCCATGCATTCTCTCACATGAACAAGTAGGACTGATATTGTCTAAAGCTATATTGCTCTTTCTATAAAGCACCTTGGTGTTGGACCTCTTTGTGAAACCTGAAAGAATATTGATTTGCTCTTTATAGTGCAACACTATAAACCTTCAACCGGCCTCTATAAAATAATGTCCCTGCATTTGATACACACGAGGAGAAAGACATAGGAGGAGGCTAAAGTCCTCAACATTGCTCTAAAGACAAGACCGTAGCATCACTGTCTCTTATCTCGGACTGATTGCACGTCTATGATTGCCTGCTGCTAGATTAGATAACGCGATACCTTATTTTTAATACGTTCTGTTAGATGAGATGTTTAGATGAATGAGCTTTTTTGCCACAATATCGCTAAGGGTGTAGGCCATTGTAATTGAATGTAACACTTTCTCCTTTATATAGATTTGGAGTACAAACCAGTAATGCCACTTGATAACAGCATTTACGCATTGTATCTCTCATCCATACTTTACATTCCTTACATAAATGTTGTTT

Function

NR:

description
transmembrane protein 106B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1540622 True 1466 lncRNA 0.41 5 17405545 17407873

Neighbor

gene id symbol gene type direction distance location
LOC110491477 psme3 coding downstream 11280 17389099 ~ 17394265 (-)
LOC110491474 LOC106579337 coding downstream 24835 17376457 ~ 17380710 (-)
LOC110491471 LOC106579339 coding downstream 45915 17356395 ~ 17359630 (-)
LOC110491470 LOC106579340 coding downstream 53160 17306058 ~ 17352385 (-)
LOC110491465 LOC106579029 coding downstream 231611 17158314 ~ 17212112 (-)
LOC110491488 NA coding upstream 140332 17548205 ~ 17569945 (-)
LOC110492844 LOC106589301 coding upstream 263613 17671486 ~ 17682483 (-)
LOC110491480 LOC106589300 coding upstream 276598 17684471 ~ 17694082 (-)
LOC110491482 LOC106579329 coding upstream 306007 17713880 ~ 17868844 (-)
LOC110491487 NA coding upstream 315014 17722887 ~ 17727796 (-)
G1347556 NA non-coding downstream 111910 17287995 ~ 17293635 (-)
G1347345 arf1l non-coding downstream 174837 17207145 ~ 17230708 (-)
G1347807 NA non-coding upstream 167681 17575554 ~ 17575791 (-)
G1347851 NA non-coding upstream 188293 17596166 ~ 17607260 (-)
G1347877 NA non-coding upstream 222759 17630632 ~ 17630937 (-)
G1348028 LOC106579328 non-coding upstream 231738 17639611 ~ 17659833 (-)
G1347343 NA other downstream 209416 17195330 ~ 17196129 (-)
G1347067 NA other downstream 476113 16924522 ~ 16929432 (-)
G1345561 NA other downstream 1706282 15698985 ~ 15699263 (-)
G1345259 NA other downstream 2151975 15251377 ~ 15253570 (-)
prr15lb atd4b other upstream 1009742 18417572 ~ 18423242 (-)
G1349366 NA other upstream 1226158 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 1912997 19310970 ~ 19325094 (-)
G1349896 NA other upstream 2053168 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 2283819 19691616 ~ 19697840 (-)

Expression


Co-expression Network