Gene
RNA
| Item | Value |
|---|---|
| gene id | G1348800 |
| gene name | tbx21 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 18379533 ~ 18380412 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tbx21 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including heart looping; lymphocyte migration; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; hematopoietic system; integument; kidney; and telencephalon. Human ortholog(s) of this gene implicated in asthma, nasal polyps, and aspirin intolerance. Orthologous to human TBX21 (T-box transcription factor 21). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1541931 | True | 880 | lncRNA | 0.45 | 1 | 18379533 | 18380412 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pdk2a | LOC106579320 | coding | downstream | 137423 | 18231526 ~ 18242110 (-) |
| LOC110491495 | LOC106579322 | coding | downstream | 152614 | 18223484 ~ 18226919 (-) |
| myo1d | LOC106579321 | coding | downstream | 156618 | 18098959 ~ 18222915 (-) |
| LOC110491492 | LOC100380795 | coding | downstream | 291198 | 18080272 ~ 18088335 (-) |
| LOC110491491 | LOC106579324 | coding | downstream | 306144 | 18026514 ~ 18073389 (-) |
| LOC100136345 | osbpl7 | coding | upstream | 16065 | 18396477 ~ 18409234 (-) |
| mrpl10 | mrpl10 | coding | upstream | 29363 | 18409775 ~ 18412088 (-) |
| prr15lb | atd4b | coding | upstream | 37160 | 18417572 ~ 18423242 (-) |
| si:ch211-194k22.8 | LOC106579386 | coding | upstream | 53773 | 18434185 ~ 18437208 (-) |
| cbx1b | cbx1 | coding | upstream | 67504 | 18447916 ~ 18457521 (-) |
| G1348784 | NA | non-coding | downstream | 44990 | 18334328 ~ 18334543 (-) |
| G1348689 | NA | non-coding | downstream | 180425 | 18198801 ~ 18199108 (-) |
| G1348669 | NA | non-coding | downstream | 215171 | 18163359 ~ 18164362 (-) |
| G1348631 | NA | non-coding | downstream | 282357 | 18096883 ~ 18097176 (-) |
| G1348630 | NA | non-coding | downstream | 283716 | 18092488 ~ 18095817 (-) |
| G1348804 | NA | non-coding | upstream | 9834 | 18390246 ~ 18390523 (-) |
| G1348778 | NA | non-coding | upstream | 10359 | 18390771 ~ 18392168 (-) |
| G1348858 | NA | non-coding | upstream | 134066 | 18514478 ~ 18514714 (-) |
| hoxb1b | hoxb1 | non-coding | upstream | 143767 | 18522453 ~ 18525045 (-) |
| LOC110491505 | hoxb3 | non-coding | upstream | 147763 | 18525206 ~ 18550690 (-) |
| LOC110491477 | psme3 | other | downstream | 987579 | 17389099 ~ 17394265 (-) |
| G1347343 | NA | other | downstream | 1183404 | 17195330 ~ 17196129 (-) |
| G1347067 | NA | other | downstream | 1450101 | 16924522 ~ 16929432 (-) |
| G1345561 | NA | other | downstream | 2680270 | 15698985 ~ 15699263 (-) |
| G1345259 | NA | other | downstream | 3125963 | 15251377 ~ 15253570 (-) |
| G1349366 | NA | other | upstream | 253619 | 18634031 ~ 18634405 (-) |
| LOC110491541 | LOC106579266 | other | upstream | 940458 | 19310970 ~ 19325094 (-) |
| G1349896 | NA | other | upstream | 1080629 | 19461041 ~ 19461815 (-) |
| LOC110491553 | LOC106579383 | other | upstream | 1311280 | 19691616 ~ 19697840 (-) |
