G1348778


Basic Information

Item Value
gene id G1348778
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18390771 ~ 18392168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1541908
agagagggggagagagggggcgagagagagagatcactgaCTGCATGAAATTACTAATGAGGGTTACACAGTTTATTTTCTTATCGTGGGAAAGTCTTCTTGTTTGGCACTTCAGTGTGAGTACACTTCTGTTCCTAATTACGTTATAAACGTCTatggcagtggtcaccaaccttttctgagtcaagatcactttctgagtcaaaatgcatgcCGAGATCTACCACTCTGATTTTTTGTTaacatgactttaaaaaaaattaagcctatgcaacattaaccaattaaagacagtactgtaccAGTGAGGTATGTGCAGCAAgcaataggcccaatacattatccccGCAtactggctttgcttgaattgacCTGCCAATGAATTGTTGTTCGGgacatgtaaaaatatatatatttcaaaatttgaggtaggctatatgatcacaccggtaatagatccattgttgtattactgggctgatggtgcctgcatctgatggtcagtctcagaggagggagagagcaacatctctcaacatccctccgctctccctttcctccactgacactgaccaaaaagggacaccgtcttccagctgatggcgaaattCGAGTCGCATCACATTgcttctgcctcatgcacaaattcaggttgttactcctatgaacagagaaacgttccttgatattaaaaaagacccaagccgctatagatacactttcctactcattcattactgctgcactgcttgttgtagagctgagtggaaataggaagaacacACATTTTATGGGTGAATAAAGTGTTCAagacaaagtgttgacagtgctgagtaagaacttaaacatgaactcactcataaaacagcagctctttgctgtattcattgacagtctctctctagtcatggttttaaacgttttgaaatcacagtatcaactttttttttatttttttatttttttttacctcacaTAACATGGCAACAGTTTGCCTACCCGGGTGCAGGGCAGCTGAATTGactgcacctaccaccaacaacccgataataattttaaaaaaaataggaacacaaggccttatcgttgtttttttttacagaaatatttggcgatcgactagaaatgccttggagatcgacaaGTCGATcgcgatcgaccggttggtgaccccTGGTCTATGGTATGCTAAGGAAAAGGGCTAGTCAAATGAGCTGTTGAGGTCAGGCGAGGTGACTCACGTCTGCGTTCTGATAGGCTGTGACGGCGATGAATTGGGTCTCTGGGAAGACGAAGGTCTGGGCCTTGGCGGTGAGGAAGAGGTCCTCAGAACCATCCTCCTTCACTTCGACGATGTGCAACCGTGGCTGGTACTTATGAAGTGACTGCAGAACGATC

Function

NR:

description
T-box expressed in T cells, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1541908 True 1398 lncRNA 0.43 1 18390771 18392168

Neighbor

gene id symbol gene type direction distance location
pdk2a LOC106579320 coding downstream 148661 18231526 ~ 18242110 (-)
LOC110491495 LOC106579322 coding downstream 163852 18223484 ~ 18226919 (-)
myo1d LOC106579321 coding downstream 167856 18098959 ~ 18222915 (-)
LOC110491492 LOC100380795 coding downstream 302436 18080272 ~ 18088335 (-)
LOC110491491 LOC106579324 coding downstream 317382 18026514 ~ 18073389 (-)
LOC100136345 osbpl7 coding upstream 4309 18396477 ~ 18409234 (-)
mrpl10 mrpl10 coding upstream 17607 18409775 ~ 18412088 (-)
prr15lb atd4b coding upstream 25404 18417572 ~ 18423242 (-)
si:ch211-194k22.8 LOC106579386 coding upstream 42017 18434185 ~ 18437208 (-)
cbx1b cbx1 coding upstream 55748 18447916 ~ 18457521 (-)
G1348804 NA non-coding downstream 248 18390246 ~ 18390523 (-)
G1348800 tbx21 non-coding downstream 10359 18379533 ~ 18380412 (-)
G1348784 NA non-coding downstream 56228 18334328 ~ 18334543 (-)
G1348689 NA non-coding downstream 191663 18198801 ~ 18199108 (-)
G1348669 NA non-coding downstream 226409 18163359 ~ 18164362 (-)
G1348858 NA non-coding upstream 122310 18514478 ~ 18514714 (-)
hoxb1b hoxb1 non-coding upstream 132011 18522453 ~ 18525045 (-)
LOC110491505 hoxb3 non-coding upstream 136007 18525206 ~ 18550690 (-)
G1349314 NA non-coding upstream 141386 18533554 ~ 18533859 (-)
G1349317 NA non-coding upstream 145908 18538076 ~ 18538335 (-)
LOC110491477 psme3 other downstream 998817 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1194642 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1461339 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2691508 15698985 ~ 15699263 (-)
G1345259 NA other downstream 3137201 15251377 ~ 15253570 (-)
G1349366 NA other upstream 241863 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 928702 19310970 ~ 19325094 (-)
G1349896 NA other upstream 1068873 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1299524 19691616 ~ 19697840 (-)

Expression


Co-expression Network