G1349329



Basic Information


Item Value
gene id G1349329
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18556722 ~ 18557003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1542547
ggttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtagttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttca

Function


NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1542547 True 282 lncRNA 0.39 1 18556722 18557003

Neighbor


gene id symbol gene type direction distance location
LOC110492883 hoxb8ba coding downstream 3751 18551195 ~ 18552971 (-)
LOC110491505 hoxb3 coding downstream 6032 18525206 ~ 18550690 (-)
LOC110491508 hoxb6ba coding downstream 10550 18543964 ~ 18546172 (-)
LOC110491507 hoxb5 coding downstream 13250 18541248 ~ 18543472 (-)
hoxb1b hoxb1 coding downstream 31677 18522453 ~ 18525045 (-)
snf8 snf8 coding upstream 38648 18595651 ~ 18603129 (-)
LOC118939514 LOC106579307 coding upstream 47982 18604985 ~ 18606174 (-)
chmp2a LOC106579304 coding upstream 65630 18622633 ~ 18626440 (-)
LOC110491515 LOC106579303 coding upstream 115338 18672341 ~ 18679390 (-)
LOC110491517 LOC106579299 coding upstream 200564 18757567 ~ 18765534 (-)
G1349317 NA non-coding downstream 18387 18538076 ~ 18538335 (-)
G1349314 NA non-coding downstream 22863 18533554 ~ 18533859 (-)
G1348858 NA non-coding downstream 42008 18514478 ~ 18514714 (-)
G1349340 NA non-coding upstream 21551 18578554 ~ 18578786 (-)
G1349342 NA non-coding upstream 22288 18579291 ~ 18579519 (-)
G1349346 NA non-coding upstream 26783 18583786 ~ 18584017 (-)
G1349347 NA non-coding upstream 27132 18584135 ~ 18584359 (-)
G1349349 NA non-coding upstream 28441 18585444 ~ 18585782 (-)
prr15lb atd4b other downstream 133536 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1164768 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1360593 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1627290 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2857459 15698985 ~ 15699263 (-)
G1349366 NA other upstream 77028 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 763867 19310970 ~ 19325094 (-)
G1349896 NA other upstream 904038 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1134689 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1773397 20330400 ~ 20334029 (-)

Expression



Co-expression Network