G1349308


Basic Information

Item Value
gene id G1349308
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18594183 ~ 18595609 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1542511
aACACAACTGTGAAGACAACTTTATTTGTTGCTTGAACATCCCACATGAATCTCATTTCAATCCTTACATTATCAGAGAGCATCATTTGACCATGAGTCATTTGACTTTATTATGCAACACATCGTTTACATTTAAGCGGCATGTTAAAGGGGAATATAGTGAAGTTAGCCAAAGTAAACATACAGTAGTTCAGAAGAGATAATAGCAGTAGAGTAAACCTAGGAAACGTAttaaatagcagatccatacagTCCTATCCATTAGGATGGAGGCAAATTAAGAATAAAcagtcaaccctaaccctaatcatcAAAGTGTCTAAAACAATATGATCAATTCAGGCAAATTAAGAATAAAcagtcaaccctaaccctaaccatcaaAGTGTCTAAAACAATATGATCAATTCAGGCAAATTCAATTAGATACAGATTTCCCAGACATTAAATTCACAACCCTTAACGTTACCAGGTTCGATAACATTGACAGTAATAAACAGGGACCTTTAAATGTTTGTCTTACAATGTCGTGGATAGGTTGTTAGCCTGTATTTATttgtccccccccaccccccacctctTAGAAATATAATTAGTAGGGTATCAGCTTTCCTTAACGAGTAGTCAACTCTCTGGGTCGTGAGGATGTGGCTTCTCTACACCTCATGGCTGTAGACGTGTTCCTCATACTTGGTCTGCTCCATTCCGTCACAGATGAGGGTGCAAAAGGGGCACACTCTGTGGCTGTCCTCGTGCAGCTCCAGCTCATTCGGGGTGATGCCAGGGAAGCACTCATGGCAGTGACGACACGTCAAGGACAACTATAGGACAGACACGGGTCATAAGTGGTAATAATATCAGATCTAGACTGGATAGTTAACTGTACTCTAGCACAAACATTATAGAGCATTATGAAACCAACTCTTTGATCCCAAACCACTAGTGTATGTTGTTGCAAACATAATCTGCCGTATAACCATGTATATCATAGGAGTGACTTAACATACCTCCTCCGCGTTTGTCGCAGGGCCTGCAAACAGAATCATATGTCAGCCATAGTTGAACCTGTTTTGTTATTTTCCAAGAAGGCGTGTCCATGAGGTACAAGTGGCGTTCATGTCTCATTTGAGAATATTTAGGTGAGGCTTTCCAACAGCTGGAATATTGGGAATACCTGGGGTCTCATAAGGGTTCCCAAAGTGGAGAGAGGCAGCCAGTGTATCTTGCTGCTGCTCCTCAGTGGGGGTGGGGTCAGTTGAAGAGCCATAAGGGTTGGGATGCTGCATGGACACTGGAGCAACCTGGATGTCAGCAAACTCCTTGCGAAGTCTCTCAACATTTCTTTTGAGATCCTGACAGATAG

Function

NR:

description
calcium-binding and coiled-coil domain-containing protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1542511 True 1363 lncRNA 0.42 2 18594183 18595609

Neighbor

gene id symbol gene type direction distance location
ttll6 LOC106579309 coding downstream 18673 18553176 ~ 18575510 (-)
LOC110492883 hoxb8ba coding downstream 41212 18551195 ~ 18552971 (-)
LOC110491505 hoxb3 coding downstream 43493 18525206 ~ 18550690 (-)
snf8 snf8 coding upstream 42 18595651 ~ 18603129 (-)
LOC118939514 LOC106579307 coding upstream 9376 18604985 ~ 18606174 (-)
chmp2a LOC106579304 coding upstream 27024 18622633 ~ 18626440 (-)
LOC110491515 LOC106579303 coding upstream 76732 18672341 ~ 18679390 (-)
LOC110491517 LOC106579299 coding upstream 161958 18757567 ~ 18765534 (-)
G1349349 NA non-coding downstream 8401 18585444 ~ 18585782 (-)
G1349347 NA non-coding downstream 9824 18584135 ~ 18584359 (-)
G1349346 NA non-coding downstream 10166 18583786 ~ 18584017 (-)
G1349342 NA non-coding downstream 14664 18579291 ~ 18579519 (-)
G1349340 NA non-coding downstream 15397 18578554 ~ 18578786 (-)
G1349353 NA non-coding upstream 24889 18620498 ~ 18621764 (-)
G1349316 NA non-coding upstream 31531 18627140 ~ 18628682 (-)
G1349365 LOC106579302 non-coding upstream 37898 18633507 ~ 18633849 (-)
G1349367 LOC106579302 non-coding upstream 38867 18634476 ~ 18634888 (-)
G1349368 NA non-coding upstream 39660 18635269 ~ 18635891 (-)
prr15lb atd4b other downstream 170997 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1202229 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1398054 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1664751 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2894920 15698985 ~ 15699263 (-)
G1349366 NA other upstream 38422 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 725261 19310970 ~ 19325094 (-)
G1349896 NA other upstream 865432 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1096083 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1734791 20330400 ~ 20334029 (-)

Expression


Co-expression Network