G1349353


Basic Information

Item Value
gene id G1349353
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18620498 ~ 18621764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1542571
TCAACACAAAtatttaaataatacaaaaataagcCATGTATTTCATATTTACAACATTTGCTCCTGAAAGCTATGTACAGAAGAACAATTTCGCATTATTTCAAAACCAGcctgtatggtgtggtctgtagcGTCGGAGAGCCAGGAAGCCATCGAGCCAAAAGTAAAAATGTTGACGCGATAACACATGACAGAACACAAGCTTAACATCGCCAGGTGCTCGATGCCAATATCGTTAGATATAGCTAGCATTTAAGAGAAGGAAAATACCCAGCATTAAGTTTGAGCACTCTAGCTGATTAGGCTACTCTAATGCCAACCCATGTTTTCCAAACTGATATCCATCTCAGTTGTCTACTGCAATTTGTGATGTCATGGGGGAAAAAACATCCTAAAATGAAAAACACGAGCAAATTCCTCACAGAGAACGTTCTAGAAACAAGGCAGTTGTCTAAACAAAGCAGTGTTTTTATGAATAATGCAGCCAGAGTCATGCTTTCGAAATTAAATCAGATATTACTCTTCTCTGAATTGTACTCAGCGGAAATGTTTAATTTACAGATCTACCATGCTGATAGTTGATATCGCCTGGAACAGAGTTGTCACCTCAAAAAAGACCATGCAGAATCGAATGATTAGCATACTGTAGAAGACCCATGGTTCTCAAATTAATTTGACATTTTTTTCTGCCAAGAAGTACTCATTTAAACAACCAACTTCTCTTCATGATGCAAAGTATGGACAATCATTTTAGCATCAGAAGAGGACATTTCTCATATTTACTGCATTTGTGATTAAACATACATGCAGAGTGAGGATCAAACATATATCCACACTTTAGTGCACAATAATAAAACCTTTTGCTTGAAGCGGTGTCCACACAAGGAAATATTATTACAGTTAATACACAGACAGGGAAAATAGTTCAGTTTCAATCTAAGCAAAACACCGAGCATGTAAATGCCAATGGAGCTTCCAGCATACAGGGTTAGTTGTAGCAATGTGCATATCGTACAATTCAAGCACTGACATTCAGTCAAATCGGAAAATATCACTTCTCTTACCCTTTAGATCACAGTCCCCAAGTTAAGTCAGGTTGACAACTATGTAACAATGTAGTAATGATCAAAAGTTACACATTTTAGTGATGATGCAGTAATTAAGTATTACATTACACCAAATTCCAAAACATTTGGGAAATGTTTGTGCTCCCCAGGTTTGCTTCACAGAACATGCTTATTACTAAATAGTTACTTACTACAGACAT
>TU1542572
TCAACACAAAtatttaaataatacaaaaataagcCATGTATTTCATATTTACAACATTTGCTCCTGAAAGCTATGTACAGAAGAACAATTTCGCATTATTTCAAAACCAGcctgtatggtgtggtctgtagcGTCGGAGAGCCAGGAAGCCATCGAGCCAAAAGTAAAAATGTTGACGCGATAACACATGACAGAACACAAGCTTAACATCGCCAGGTGCTCGATGCCAATATCGTTAGATATAGCTAGCATTTAAGAGAAGGAAAATACCCAGCATTAAGTTTGAGCACTCTAGCTGATTAGGCTACTCTAATGCCAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1542571 False 1267 lncRNA 0.37 1 18620498 18621764
TU1542572 True 321 lncRNA 0.39 1 18621444 18621764

Neighbor

gene id symbol gene type direction distance location
LOC118939514 LOC106579307 coding downstream 14324 18604985 ~ 18606174 (-)
snf8 snf8 coding downstream 17369 18595651 ~ 18603129 (-)
ttll6 LOC106579309 coding downstream 44988 18553176 ~ 18575510 (-)
LOC110492883 hoxb8ba coding downstream 67527 18551195 ~ 18552971 (-)
LOC110491505 hoxb3 coding downstream 69808 18525206 ~ 18550690 (-)
chmp2a LOC106579304 coding upstream 869 18622633 ~ 18626440 (-)
LOC110491515 LOC106579303 coding upstream 50577 18672341 ~ 18679390 (-)
LOC110491517 LOC106579299 coding upstream 135803 18757567 ~ 18765534 (-)
LOC110491520 NA coding upstream 188152 18809916 ~ 18816182 (-)
acsf2 LOC106579292 coding upstream 201855 18823619 ~ 18853128 (-)
G1349308 NA non-coding downstream 24889 18594183 ~ 18595609 (-)
G1349349 NA non-coding downstream 34716 18585444 ~ 18585782 (-)
G1349347 NA non-coding downstream 36139 18584135 ~ 18584359 (-)
G1349346 NA non-coding downstream 36481 18583786 ~ 18584017 (-)
G1349342 NA non-coding downstream 40979 18579291 ~ 18579519 (-)
G1349316 NA non-coding upstream 5376 18627140 ~ 18628682 (-)
G1349365 LOC106579302 non-coding upstream 11743 18633507 ~ 18633849 (-)
G1349367 LOC106579302 non-coding upstream 12712 18634476 ~ 18634888 (-)
G1349368 NA non-coding upstream 13505 18635269 ~ 18635891 (-)
G1349378 NA non-coding upstream 33110 18654874 ~ 18655508 (-)
prr15lb atd4b other downstream 197312 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1228544 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1424369 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1691066 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2921235 15698985 ~ 15699263 (-)
G1349366 NA other upstream 12267 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 699106 19310970 ~ 19325094 (-)
G1349896 NA other upstream 839277 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1069928 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1708636 20330400 ~ 20334029 (-)

Expression


Co-expression Network