G1349316


Basic Information

Item Value
gene id G1349316
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18627140 ~ 18628682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1542519
AGGAGGCCTGTGTCTGGGGCTGGTTCGAGATTCTTTACCTCCAGGACCGTGTACAGATCCTGATCCACAAAGCTCCCTTTCCGAGCCCGAGGAGGGCGATGTGGCCCGCTGCACAGCGAGGTCTACTCTTCTCCTGCGCCGCTCTCTGTCTCGTTGAGAACGGGAGCGTCGGCTGTGTCTGAACACACTACTTCGAATCGGACCTTCCATGTCAAAAAAAAGCACCAGTCCCAGTCTGACCGAAGGCACTTGAAAAATCCGGCACGGTGGCACTTTCCTTAGACCAAAAAGAAACACCAACACAGGCCCACAACGGAGCCCCTGTTTAAAATGGCGTTAATAGTAGTCTATTATTTAGCGTCTTTTGCGGACAGGATGGCATCTGTGCTTTTCTCTCGGCGAACTTTGACTGTCATGTCAATGCACGAAGATGCTATCTTTATTTCCAGAATTGTTGGTATTACTGTTCAGCAGGAGAAACCCCAGGAAGCTATTGTCAAGACATGGCTGATTCTAAGTCTCAAAAGCTAGCTGGCAAGACAAAAACCAAATATGCGTATGTAAACAAAATCACTAACTCTAGCTAACCAACTTGCGTAGTTAGCCGTTTTTCCCCCAAAACGTGTATTTTATAGCAATGTTACGTTTACTGATGTAATACTGAAATGTGAAGCATACCCATCTCGTTCCAATTAAAATTTCGGCAAGAGCTGACAAATGAGCTCGCTAAAATCGCTCATTAGCCAATGATAGCTTAACTGCTAACTAGCTAAACGGACAATAGCTCGATAGATAGCTTACCTGCCACGGAAAATAACCAGAGTAAGATATGTGTTGCTAGTTTAAAGCATATATCACTGCTTATCCAACTAATTTAGCGCAGCCACACTTATAAGCAGCTAGACAGTTAACTGTTTTTGTAGCTAAGCTAACTTGAGCAATACATGAGAATTATATCCACTTGCTAGctgctagctaggctaatgctaCATAGATACATGTATGTACATACATGTAAGTGCTTTATTATGCTAACCTTGGGTAGCTAATTAGTAGCTAATTAGCATGTGTATCGCAAACTCAATGTAGCTAGTTATCACGGAGTAGGCACGTTACTTGAGTAAAACGCATTCTTTAAAAACCGTCTGAAATATTGATTAGCACAAAATCCATAACTACCCTGCAGCAGCTGGGAgtaaagctagctaacattttccAGTCTGACGATGGGCCCGATACGAATGGTTGTATTATCGTATAAGACCTAACTAATCCACAAAAATGGTTTTGTTTACACCAAGACTGAAGTTATATGGCGACTGTTTGGCCACCCACCATCCGTGTGTTATCGATGTGTCTCTTCCTACACCAATTTGTTTTCGCATAACAGTCATTAAAGACGAAATTATTCAAGGCCCTATGGAAGCCTCGATCTGGAGTTCCATTGATAAGGGTGTCGACCAAACCCCTGGCAGAACAACTCCGTCAGCGGCCCACACAATAATGCACTGTGTAGGGGGAAGTTATTTGCCGACGTTTCCGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1542519 True 1543 lncRNA 0.44 1 18627140 18628682

Neighbor

gene id symbol gene type direction distance location
chmp2a LOC106579304 coding downstream 700 18622633 ~ 18626440 (-)
LOC118939514 LOC106579307 coding downstream 20966 18604985 ~ 18606174 (-)
snf8 snf8 coding downstream 24011 18595651 ~ 18603129 (-)
ttll6 LOC106579309 coding downstream 51630 18553176 ~ 18575510 (-)
LOC110492883 hoxb8ba coding downstream 74169 18551195 ~ 18552971 (-)
LOC110491515 LOC106579303 coding upstream 43659 18672341 ~ 18679390 (-)
LOC110491517 LOC106579299 coding upstream 128885 18757567 ~ 18765534 (-)
LOC110491520 NA coding upstream 181234 18809916 ~ 18816182 (-)
acsf2 LOC106579292 coding upstream 194937 18823619 ~ 18853128 (-)
tap2t tap2a coding upstream 234340 18863022 ~ 18875578 (-)
G1349353 NA non-coding downstream 5376 18620498 ~ 18621764 (-)
G1349308 NA non-coding downstream 31531 18594183 ~ 18595609 (-)
G1349349 NA non-coding downstream 41358 18585444 ~ 18585782 (-)
G1349347 NA non-coding downstream 42781 18584135 ~ 18584359 (-)
G1349346 NA non-coding downstream 43123 18583786 ~ 18584017 (-)
G1349365 LOC106579302 non-coding upstream 4825 18633507 ~ 18633849 (-)
G1349367 LOC106579302 non-coding upstream 5794 18634476 ~ 18634888 (-)
G1349368 NA non-coding upstream 6587 18635269 ~ 18635891 (-)
G1349378 NA non-coding upstream 26192 18654874 ~ 18655508 (-)
G1349431 NA non-coding upstream 116547 18745229 ~ 18782372 (-)
prr15lb atd4b other downstream 203954 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1235186 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1431011 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1697708 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2927877 15698985 ~ 15699263 (-)
G1349366 NA other upstream 5349 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 692188 19310970 ~ 19325094 (-)
G1349896 NA other upstream 832359 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1063010 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1701718 20330400 ~ 20334029 (-)

Expression


Co-expression Network