Gene
RNA
| Item | Value |
|---|---|
| gene id | G1349367 |
| gene name | LOC106579302 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 18634476 ~ 18634888 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| autism susceptibility gene 2 protein-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1542586 | False | 287 | lncRNA | 0.67 | 1 | 18634476 | 18634762 |
| TU1542587 | True | 413 | lncRNA | 0.59 | 1 | 18634476 | 18634888 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| chmp2a | LOC106579304 | coding | downstream | 8036 | 18622633 ~ 18626440 (-) |
| LOC118939514 | LOC106579307 | coding | downstream | 28302 | 18604985 ~ 18606174 (-) |
| snf8 | snf8 | coding | downstream | 31347 | 18595651 ~ 18603129 (-) |
| ttll6 | LOC106579309 | coding | downstream | 58966 | 18553176 ~ 18575510 (-) |
| LOC110492883 | hoxb8ba | coding | downstream | 81505 | 18551195 ~ 18552971 (-) |
| LOC110491515 | LOC106579303 | coding | upstream | 37453 | 18672341 ~ 18679390 (-) |
| LOC110491517 | LOC106579299 | coding | upstream | 122679 | 18757567 ~ 18765534 (-) |
| LOC110491520 | NA | coding | upstream | 175028 | 18809916 ~ 18816182 (-) |
| acsf2 | LOC106579292 | coding | upstream | 188731 | 18823619 ~ 18853128 (-) |
| tap2t | tap2a | coding | upstream | 228134 | 18863022 ~ 18875578 (-) |
| G1349365 | LOC106579302 | non-coding | downstream | 627 | 18633507 ~ 18633849 (-) |
| G1349316 | NA | non-coding | downstream | 5794 | 18627140 ~ 18628682 (-) |
| G1349353 | NA | non-coding | downstream | 12712 | 18620498 ~ 18621764 (-) |
| G1349308 | NA | non-coding | downstream | 38867 | 18594183 ~ 18595609 (-) |
| G1349349 | NA | non-coding | downstream | 48694 | 18585444 ~ 18585782 (-) |
| G1349368 | NA | non-coding | upstream | 381 | 18635269 ~ 18635891 (-) |
| G1349378 | NA | non-coding | upstream | 19986 | 18654874 ~ 18655508 (-) |
| G1349431 | NA | non-coding | upstream | 110341 | 18745229 ~ 18782372 (-) |
| G1349460 | NA | non-coding | upstream | 162973 | 18797861 ~ 18799342 (-) |
| G1349462 | NA | non-coding | upstream | 167459 | 18802347 ~ 18802617 (-) |
| G1349366 | NA | other | downstream | 71 | 18634031 ~ 18634405 (-) |
| prr15lb | atd4b | other | downstream | 211290 | 18417572 ~ 18423242 (-) |
| LOC110491477 | psme3 | other | downstream | 1242522 | 17389099 ~ 17394265 (-) |
| G1347343 | NA | other | downstream | 1438347 | 17195330 ~ 17196129 (-) |
| G1347067 | NA | other | downstream | 1705044 | 16924522 ~ 16929432 (-) |
| LOC110491541 | LOC106579266 | other | upstream | 685982 | 19310970 ~ 19325094 (-) |
| G1349896 | NA | other | upstream | 826153 | 19461041 ~ 19461815 (-) |
| LOC110491553 | LOC106579383 | other | upstream | 1056804 | 19691616 ~ 19697840 (-) |
| LOC110491567 | LOC106579249 | other | upstream | 1695512 | 20330400 ~ 20334029 (-) |
| LOC110491585 | NA | other | upstream | 2005338 | 20640226 ~ 20650176 (-) |
